Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05846 ATGGCGGATGCACCGGGAAGCCCAACGGGTGGGAGTCACGAGAGTGGGGGTGACCAGAGCCCGCGTGGTTCTTCGTCTGGTGCGAGGGAACAAGACCGTTACCTACCCATTGCCAACATCAGCCGAATCATGAAGAAGGCCTTGCCGGCGAATGGGAAGATTGCTAAGGATGCCAAGGACACAATGCAGGAATGTGTTTCTGAATTCATCAGCTTTATTACCAGCGAGGCAAGTGAGAAATGCCAGAAAGAGAAAAGAAAGACCATTAATGGAGATGATTTGCTATGGGCAATGGCCACTTTAGGATTTGAAGACTACATAGAACCGCTTAAGGTGTACCTAGCAAGGTACAGAGAGCTGGAGGTTAGTTAA 372 0.4973 MADAPGSPTGGSHESGGDQSPRGSSSGAREQDRYLPIANISRIMKKALPANGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRELEVS. 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05846 123 SUPERFAMILY Histone-fold 31 121 IPR009072 GO:0046982
Seca8g05846 123 MobiDBLite consensus disorder prediction 1 31 - -
Seca8g05846 123 ProSitePatterns NF-YB/HAP3 subunit signature. 65 81 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca8g05846 123 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca8g05846 123 Gene3D Histone, subunit A 21 123 IPR009072 GO:0046982
Seca8g05846 123 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Seca8g05846 123 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Seca8g05846 123 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Seca8g05846 123 FunFam Nuclear transcription factor Y subunit B-3 23 123 - -
Seca8g05846 123 MobiDBLite consensus disorder prediction 12 27 - -
Seca8g05846 123 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05846 Seca-Chr8 151147243 151153441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05846 7 121 CCAAT-HAP3 Transcription Factor Family AT2G37060 83.621 3.33e-68 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca8g05846 CBFD_NFYB_HMF 4.6e-29 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05846 K08065 - jre:109002991 226.483