Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05838 ATGGGTCGTGGAAGAATACCCATGGAACTCATTCAGAAGGAAAAAGCTCGTAAGACAACATTTCTAAAGAGAAAGAATGGCTTGATGAAGAAAGTTTATGAGTTTTCCACACTTTGTGGAGTTGATGTTTGTGTAATTATTTATGGCCCCAACTTTGATAACCAAGATATAGTTGAACCTGAAACATGGCCCCAAGACAGAAGAGAGGTATACCGTATAATTCAAAAATATTATGACACCACTAGTGATAGACTTCCAAAGATCTATGGTGTGCAAGAGTATTATCAAGATAGAATGAAAAAGGTTGAAGGTGAGATTTCAAAAATATGCAAAGACAAGCTCAAAATAATGTACCCAACTTGGGATGATTCTTTCAATCCTCTTGGAGAGGAGCAGCTAAGGATTTTTGTTAGCTTATTGGATGCTAAGTTTGATGCTTGTAGTCAAAGGATGAATATGCTAAAAGGGAATCACAAGGGAAAAGCAATAGCTGAATCAGATAATAATATGGTTATGACACTTAGTCCCTACTTAGCCTCAAATTCAAGTAGCTACAACATTGCTCAAGCACAATTTTTCCCTCCCCTTTCAATTAGTGATAACAATGGGAGAGGAATTTTTCCATTTCAGCTTGGTGATCAGAGTTCTCAACCTTCCATGCTTCATTTTGGCCAAAATTATATGCAATTGATGGGGAAAAATGGAATGGTGATGGATTGGGCTGATCAAATTGGTAATGACAACAAAAATGGTATGCTAAAGGAGGATGGAGATGAAAATAATCAAAAGTTGTCGCCAAACTATTATTACAATGGGAATATACAGACAATGCAGCCATATAGTATTGATTTGCAGGCTCTCCCTTCTCAGTATGGAGTTGCTCCTCTGACAGATCCACCACCCGGGTTTCAACTTAATGGACTCTATGGCACAAATATGGTACAATCTCAAATGTTCAACTACATGCAAGGAAGAGAGTAG 981 0.3761 MGRGRIPMELIQKEKARKTTFLKRKNGLMKKVYEFSTLCGVDVCVIIYGPNFDNQDIVEPETWPQDRREVYRIIQKYYDTTSDRLPKIYGVQEYYQDRMKKVEGEISKICKDKLKIMYPTWDDSFNPLGEEQLRIFVSLLDAKFDACSQRMNMLKGNHKGKAIAESDNNMVMTLSPYLASNSSSYNIAQAQFFPPLSISDNNGRGIFPFQLGDQSSQPSMLHFGQNYMQLMGKNGMVMDWADQIGNDNKNGMLKEDGDENNQKLSPNYYYNGNIQTMQPYSIDLQALPSQYGVAPLTDPPPGFQLNGLYGTNMVQSQMFNYMQGRE. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05838 326 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca8g05838 326 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Seca8g05838 326 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca8g05838 326 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Seca8g05838 326 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca8g05838 326 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca8g05838 326 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca8g05838 326 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Seca8g05838 326 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca8g05838 326 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05838 Seca-Chr8 151031667 151032647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05838 1 235 Type I MADS-box Gene Family AT5G55690 35.593 2.40e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca8g05838 SRF-TF 6.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05838 - - ccaj:109800518 372.089