Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05828 ATGACCATCTCAATGTTAATGTGCAGACTTAGACAACCCATAATAAACGTTCCTTGCAGTGGCAAAAAACTGAATGTGAGGCAGATTCAGAAAGAGAAAGTAGTGTTGGTGATGGGAGCAACAGGAACAGGAAAGTCAAGGCTTTCCATTGACTTAGCTACCTGTTTTCCATCAGAAATCATCAACTCTGACAAGATTCAAATCTACGAAGGTCTTGACATTGTGACAAACAAAATCTCCGAGGAAGAACAACGTGGGGTACCCCACCACTTACTAGGAACACAAAATCCCAACACAGAGTTCACAGCCAATGATTTTCGTGACATGTCATCATCAGCTATTGACTCAATCGCAAGCCGTGAGCAACTTCCAATCATTGTTGGAGGTTCCAATTCCTACCTCGAGGCCTTAGTTGATGATGATGATTACAAATTCAGATCAAGGTACGATTTTTGCTGCCTATGGGTGGATGTATCAATGCCTGTTCTTCATTCCTATGTAGCAGAGCGTGTTGATCAAATGGTTAGCAATGGAATGGTGAATGAAATGAGACCCTTTTTCAGTCCCAATGGGAATTACTCAAGAGGGATTAGAAAAGCCATTGGGGTCCCTGAATTTGATGAGTATTTTAGAAATGAAGCATTTGTTGATGAGGAAACAAGAAAGGAGTTATTAGAAAAAGCTATAAGTGAAATGAAGTTGAATACTTGTAAGCTAGCTAGGAAACAGTTGGGGAAGATTCTTAGGTTGAGGAATGTTAAGAGATGGAAGATTCATCGCTTAGATGCTACACCTGTGTTTAGAAAACAAGGACAAGAAGCAGAGGAAGCTTGGAGGAAGATGGTTGCAGAGCCTAGTGCTATGATTGTTGCTAACTTTCTGTATAATTCAAACACTGCAAATGTTGTTTCTGATCTTAGAATGCCAGCTTCTAAGACTGTTATGGCTGCGGCAACATGCTAG 963 0.4071 MTISMLMCRLRQPIINVPCSGKKLNVRQIQKEKVVLVMGATGTGKSRLSIDLATCFPSEIINSDKIQIYEGLDIVTNKISEEEQRGVPHHLLGTQNPNTEFTANDFRDMSSSAIDSIASREQLPIIVGGSNSYLEALVDDDDYKFRSRYDFCCLWVDVSMPVLHSYVAERVDQMVSNGMVNEMRPFFSPNGNYSRGIRKAIGVPEFDEYFRNEAFVDEETRKELLEKAISEMKLNTCKLARKQLGKILRLRNVKRWKIHRLDATPVFRKQGQEAEEAWRKMVAEPSAMIVANFLYNSNTANVVSDLRMPASKTVMAAATC. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05828 320 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 258 - -
Seca8g05828 320 Gene3D - 31 294 IPR027417 -
Seca8g05828 320 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 31 293 IPR039657 -
Seca8g05828 320 Pfam IPP transferase 146 244 - -
Seca8g05828 320 Pfam IPP transferase 67 140 - -
Seca8g05828 320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 141 IPR027417 -
Seca8g05828 320 FunFam Adenylate isopentenyltransferase 5, chloroplastic 160 258 - -
Seca8g05828 320 FunFam Adenylate isopentenyltransferase 5, chloroplastic 31 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05828 Seca-Chr8 150919624 150920586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05828 147 294 C2H2 Transcription Factor Family AT2G27760 33.143 7.80e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05828 K10760 - gmx:100803964 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05828 8 150919624 150920586 Seca8g05828 8 150919624 150920586 ECH
Seca8g05828 8 150919624 150920586 Seca8g05828 8 150919624 150920586 PCT