Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05823 ATGACAGATGTGCATGGAGATTCCACCGTGATTAACTGTGAAAATAGATTTGAAAGTGCTCTTGAAGTCGACCATCTCAATGACGAACTACCATTAATACCTCCCTTAGAGCCTTTTGAAGGAATGGAGTTTGCATCAATTGGAGATGCAAAGAACTACTACACAAGGTACGCAAAGAACAAGGGTTTTAGTTTCCGTATGGGTCGTGTTACTAAATCAAGAACAAATGGTATGATAATTGGCCAAGAGATCCTTTGTTCAAAGGAGGGGTTTCGAAGAAGAAAAAAGGTGGAAGGGGAAAATGGAAGCCTTGTAGCACGTGATGAAACCAGAGTGGGATGCAAAGCAATGTTATATATAAAGAAAAATGAAGATGGATGGATTGTTTCTAGATTTATAAAAGACCATAATCATGAATTGTTCTCCCCAAGGAGTTCAAAGTTTCTTCGAGTGCATAGAAAGAAAACTAAGGTGCAAAAAAAGTTGATTGATGTGCTTGATGATTCTGGTCTGCGTCCAAGCAAAACAACATCTGTCTTGTGTACTCAAAGTGGTGGTACTGATAAAGTTGGATTTAGTCAACAAGATGTTATTAATTACTTGAGTCAAAAGAGACAAAAGCAATTAGAAAAAGGAGATGCCCAATTGATGTTATCGTACTTTAAGAATTGTCAAATGAAGAATACTGGATTTTTTTATGCATTTCAAATGGATGCGGAAGGGCAATTAGCAAATTGCTTTTGGGTCGATTCAAGGTCTAGAATGGCTTACAAATATTTTGGTGATGTGGTGACTTTTGATCCAACATACTTAACAAATAGATACAGAATGCCTTTTGTTCCTTTCACAGGTGTTAATCATCATCAACAATCCATTCTTTTTGGTTGTGCTCTATTATGGGATGAAACTGAAGAGAGTTTTGTTTGGTTGTTGAGTTCTTGGTTAGAAGCAATGTCTGGTGTTTGTCCTAAAACTATCATCACAGACCAAGACACTGCTATTACTAATGCAGTTGCAAGGGTGTTTCCAGAGTGCATCCACCAATCTATCACTATTGAAGAATTTGAATCTGATTGGGAAGCAATGATAGATAAATATGGGTTGCAAGATAATCAGTGGCTAGAAAAGATATACTCTGTTCGAGAAAGATGGATTCCTGCTTATGTACGTCATAATTTTTGTGCTGGAATGTCTACCACCCAAAGGAGTGAAAGTATGAATAAGTTCTTTAAGGATTTTTTGAATTCAAGCACTCCTTTGAGCAAATTTGTGACACAATATGAGAAGGCTCTTGATGCACGTTATAACAAGGAAAGAGAGAAGACTTTCAAGACAATGAACTCAAAACCATTTTTGCGAACCTTATATCCCATGGAAGAAGAAGCTTCGAAAAGTTATACAAGAAAATTGTTTAGGATATTCCAGGATGAGTTGGTTGGCTCTCAGATGTTTACTGCGGAGAAAGTTGTGGTTTCCAATGAAGTGTCCACTTACAAGGTTCATGAGATTCAAAAAGAGAAGCCTAACTATTATGTGACTTTTAATGTCATTTCGAAGGAAGCAAATTGCAGTTGTCACAAGTTTGAATTTTTGGGTATTCTATGTAGACATGTGTTAGTTGTATTCCTAAAGAAAAAGGTTTATTCTCTCCCTTCACAATATATTCTACATCGATGGACCATTAATGCCAAGGAGAAAATTATTGGATTGGCAATGGAAGATTTCCAAGAGGGCAACAACAAAGCTTCTAGTACTGTATTGTTTAATAATGTTATGGTTCAATCTCTTGAACTATCTGAAAGAGCTTCACGATCAAAAAAGCACCATGATGTTGCAATTCAAGGCTTAGAAAAGTTAATTGGAGAACTTGATCTATTGGAAGTTGAAGAATCAAACGAAGAGGTTGGTAATTTGACAAGTCAAGTCATCCCAGAAGTCTCCAACAATGCTTTAACTTTGCGTGATCCTCCACTTGTGGTAACTAAAGGGCGTCCACGAACTCTGCGAATGAAAGGCAGCTTGGAATTGCTCAAAAAAGGTTCCTCTACTTGTAGTTACTGTAGAAAGAAAGGTCATAACAAACGTAAATGTCCAAGTTTAAATCAAACAAGGTGTGATGTTGTTAATGGTCAAATTCCAGATATTGCTGTTAAAGCTACTAGTTTGGTTGAATCAAAGAGATGCCTATCTCATTTCACTGGGCACAAAATTCTTGGTTCTGCTTCCAAGGATAGGTGGAAGCCTTCTGAACTTGATAGTAAGTATCAGGGATTTGAGTTGTTTTCCAGGTCTCCTGTGAGAAAAGTGGAGAGATCAGACCACTCAATTCTCAATAAGCAAAAGGATGACATTCTTGCAATGGAGCAGCTTGATCTTACTCTTAGTTTGCCAAATGTTCTATTACCCATTGGTGCTCGCGAGACAACAATGCAAGCCCCTGGACCTCCCAGTTAG 2454 0.3753 MTDVHGDSTVINCENRFESALEVDHLNDELPLIPPLEPFEGMEFASIGDAKNYYTRYAKNKGFSFRMGRVTKSRTNGMIIGQEILCSKEGFRRRKKVEGENGSLVARDETRVGCKAMLYIKKNEDGWIVSRFIKDHNHELFSPRSSKFLRVHRKKTKVQKKLIDVLDDSGLRPSKTTSVLCTQSGGTDKVGFSQQDVINYLSQKRQKQLEKGDAQLMLSYFKNCQMKNTGFFYAFQMDAEGQLANCFWVDSRSRMAYKYFGDVVTFDPTYLTNRYRMPFVPFTGVNHHQQSILFGCALLWDETEESFVWLLSSWLEAMSGVCPKTIITDQDTAITNAVARVFPECIHQSITIEEFESDWEAMIDKYGLQDNQWLEKIYSVRERWIPAYVRHNFCAGMSTTQRSESMNKFFKDFLNSSTPLSKFVTQYEKALDARYNKEREKTFKTMNSKPFLRTLYPMEEEASKSYTRKLFRIFQDELVGSQMFTAEKVVVSNEVSTYKVHEIQKEKPNYYVTFNVISKEANCSCHKFEFLGILCRHVLVVFLKKKVYSLPSQYILHRWTINAKEKIIGLAMEDFQEGNNKASSTVLFNNVMVQSLELSERASRSKKHHDVAIQGLEKLIGELDLLEVEESNEEVGNLTSQVIPEVSNNALTLRDPPLVVTKGRPRTLRMKGSLELLKKGSSTCSYCRKKGHNKRKCPSLNQTRCDVVNGQIPDIAVKATSLVESKRCLSHFTGHKILGSASKDRWKPSELDSKYQGFELFSRSPVRKVERSDHSILNKQKDDILAMEQLDLTLSLPNVLLPIGARETTMQAPGPPS. 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05823 817 Pfam FAR1 DNA-binding domain 52 141 IPR004330 -
Seca8g05823 817 ProSiteProfiles Zinc finger SWIM-type profile. 510 546 IPR007527 GO:0008270
Seca8g05823 817 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 33 620 IPR031052 GO:0006355
Seca8g05823 817 Pfam SWIM zinc finger 517 545 IPR007527 GO:0008270
Seca8g05823 817 SUPERFAMILY Retrovirus zinc finger-like domains 678 703 IPR036875 GO:0003676|GO:0008270
Seca8g05823 817 SMART 26again6 521 548 IPR006564 GO:0008270
Seca8g05823 817 Pfam MULE transposase domain 263 348 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05823 Seca-Chr8 150881284 150885120 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g05823 FAR1 1.4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05823 - - tpra:123904109 996.112