Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05794 ATGGCTGCGCCACTAGGTAGTAGGCTTCAAAACATGTTGCAGGCTGCGGTGCAATCTGTTCAGTGGACTTATAGCCTCTTCTGGCAACTTTGCCCACAACAAGTGATTCTGGTTTGGGGTGATGGGTACTACAATGGAGCAATTAAGACTCGGAAGACAGTGCAACCAATGGAGGTTAGTGCTGAGGAAGCATCTCTCCAAAGAAGCCAGCAACTTAGAGAGCTCTATGAATCATTATCCGCCGGAGAAACAAACCCACCCACTCGCCGGCCTTGTGCTGCCTTGTCGCCGGAGGACTTAACAGAATCTGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCCTGGTGTCGGGTTGCCCGGAAAGGCATATGCGAGGAGGCAGCACGTATGGCTCACTGGTGCAAACGAGGTGGACAGCAAAACATTTTCAAGAGCAATTCTAGCCAAGGTACTCCAATTAGCACATAATCAACACTAA 486 0.4897 MAAPLGSRLQNMLQAAVQSVQWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKVLQLAHNQH. 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05794 161 PANTHER TRANSCRIPTION FACTOR TT8 7 152 - -
Seca8g05794 161 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 154 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05794 Seca-Chr8 150612982 150617084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05794 1 152 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 75.000 1.36e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05794 - - gmx:100807157 301.212