Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05793 ATGTACACCGTGGCAGACCCACCCGTTACCGACCCAAACCAAGATGACATGGATGAAGACGAGGAAGAAGAAGATGACGAAGACGACGAAGCCGAATCTGGCTCTGAGGATGAAACGGGAGGCCGTAACGCCCTCCCTACCTCGACGACCGACATGGCGGTTGCGGAGCCTAGCGAGCTGATGCAGTTGGAGATGCCGGAGGACATCCGGGTCGGGTCTCCGAACGACGGGTCGAACAACCTGGACTCGGATTTTCATTTGCTAGCGGTGAGTCAGCCAGGGAATCCGTCGGGGCAAGCTGAGTCGACCCGGAGGTGGGGCCCGATTGAAGAGCCGCTGCAAGTTCAACTACCAGCCTCAGTGCTTCATCCACTAGAAGACTTGACACAAGAAGACACACACTACTCTCAAACAGTATCCAACATCCTCCAAAACCAGTCCACCCGGTGGACCGAGTCTTCCTCCATTGGCTACCCCACTCACTCTACCACCCAATCAGCTTTCGCCAAGTGGACAACCCGCGCCGCCGACAACCACTTCCACACGGCGGTGGACGGCACCGCTCAGTGGCTCCTCAAGTACATCCTTTTCACAGTCCCATACCTCCACGCCAAGAACCACGACGTCGAGAGTTCTCCCCAAACCCGAGACACAACCACCGCCGTATCAGGCGATCCCGCCGCCCGGTTACGCGGCAAGGGGACGCCGCAAGACGAGCTGAGCGCCAACCACGTCCTGGCGGAACGCCGGCGGCGTGAGAAGCTAAACGAGAGGTTCATCATTTTGAGGTCCCTTGTACCCTTCGTGACGAAAATGGACAAGGCTTCTATATTAGGAGACACCATAGAGTACGTGAAACAGCTTCGAAGAAAGATCCAGGACCTCGAGACACGTAACCGTCAAATGGAGGCTGAGCAACGGTCAAGGATCGTGGAGATACCGGTTCAAAGAACGAGTAGCAGTTCCACGAAGGAGCAACAGAGGAGTGGAGTAACCGTCATGGTGGGACCCGATAAGAAGAAGGTTAGGATCGTGGAAGGGAGGGCGGCAAAAGCGGTTGAGGTTGTTGATGCTGAGTCATCCGCGTCGGTTCAAGTTTCGATCATAGAGAGTGACGCGCTTTTGGAGCTTGAGTGTCCCCACAGAGAAGGGTTGTTACTGGACGTTATGCAAATGCTGAGGGAGATGCGAATAGAAGTGATTGGGGTGCAGTCTTCGCTTAACAACGGTGTTTTTGTGGCGGAATTGAGGGCTAAAGTGAAGGAGAATACAAATGGGAAGAAGGTTAGCATTGTGGAAGTGAAGAGAGCACTCAATCAAATTATACCGCACAGTGCTTACTAG 1344 0.5454 MYTVADPPVTDPNQDDMDEDEEEEDDEDDEAESGSEDETGGRNALPTSTTDMAVAEPSELMQLEMPEDIRVGSPNDGSNNLDSDFHLLAVSQPGNPSGQAESTRRWGPIEEPLQVQLPASVLHPLEDLTQEDTHYSQTVSNILQNQSTRWTESSSIGYPTHSTTQSAFAKWTTRAADNHFHTAVDGTAQWLLKYILFTVPYLHAKNHDVESSPQTRDTTTAVSGDPAARLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQDLETRNRQMEAEQRSRIVEIPVQRTSSSSTKEQQRSGVTVMVGPDKKKVRIVEGRAAKAVEVVDAESSASVQVSIIESDALLELECPHREGLLLDVMQMLREMRIEVIGVQSSLNNGVFVAELRAKVKENTNGKKVSIVEVKRALNQIIPHSAY. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05793 447 Gene3D - 239 312 IPR036638 GO:0046983
Seca8g05793 447 SMART finulus 245 294 IPR011598 GO:0046983
Seca8g05793 447 MobiDBLite consensus disorder prediction 208 239 - -
Seca8g05793 447 PANTHER TRANSCRIPTION FACTOR TT8 13 444 - -
Seca8g05793 447 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 241 310 IPR036638 GO:0046983
Seca8g05793 447 MobiDBLite consensus disorder prediction 1 54 - -
Seca8g05793 447 MobiDBLite consensus disorder prediction 12 35 - -
Seca8g05793 447 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Seca8g05793 447 Coils Coil 278 305 - -
Seca8g05793 447 MobiDBLite consensus disorder prediction 40 54 - -
Seca8g05793 447 Pfam Helix-loop-helix DNA-binding domain 242 289 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05793 Seca-Chr8 150608154 150612226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05793 70 444 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 36.243 6.06e-58 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g05793 HLH 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05793 - - gmx:100786815 582.408