Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05772 ATGAGAGAGGGTTTGAGATCTCGGACTCGATTGGGGAAGATTTCTGGTAGCGAAGGAGTTGTTCACAAGGAAAGGTTTGACGTGAAGAATGAGGCTCTTGATTCGGTTGGGGAGGGTTTAGGAGCCAAGAACTTAAATATTGAGAAGAAGGGCGAAGTTGAACGTGCAGTAAAAGAGGAATGTGACTTGGATTTGGATGTGAGTTCCGGTGGTAACGTTGACTTAGATGAGAATGGCAACAATGGGAGTGGGGGTAGCATTGTAGAAGCTGACCTTAATAGGAAGGTGAATGAAGTGTCTATTGGGGATGGTAACGTTGATTTGGATGAGAATGACAACAATAGGAGTGGGGGCATTGTAGAAACTGACCTTGATAGGAAGGTGAATGAAGTGTCTATTGGGGGTCGAGTGTTGCGCCCAAGGTCGAGGAAAGGAGATGATAAAAAATCTTATAATGGAGAGAATGATGGAGTCTATTCTGGGAATAATAGAGGACATGGTGAGTTTGAGAGGATAAAAGTTGAGGAGTGTGAAGAGGCTCATGAAGACGGTCATGAGAATGAAAGGGTTAAGGTGAAAAAGGAAGGGAATGGCAAGATAAATTTGAAAAGGAAGCGAGGGAGGCCTCCCAAAACAGAGATGAAAGATCAAGATCAGCCTCCCAAAACAGAGATGAAATATCAAGATCAGTCACCACGTAAGCGTGGAAGACCCCCCAAGGCTGGCCATCAAGACCACCACCTGACAATGGTACATAATAGAAAAGGAAAGGTGGGCATTCGAAAAGGTAAAGTAGATTTAACTATAAAAGATGGTACAAATGTGAATGCAATTGATGATGAGCAATGTGGGAGATCATCTGGTAAAGAGTTAAAAAAGAAGGGTTTTTCTTCTACCAAGAAGAATAAATTGGGAAAGGTTTTGAAAACTGAGGACAATGGGGCGGCCTCACCGTTGAGATCAAATACTGTGAATGCAGTTGTTGCTGAGAAAAGTGGAAAGAATAAAGTAAAGCAGTTAGTGAGGGATCAAATAATGGAACGGCTTTCAGCTGCAGGCTGGACAGTTGACTACAGACCTAGGAATGGCAGACAGTATAAAGATGCAGTGTATGTCAGTCTAGACGGAAAGACACACTGGTCAATCACCTTGGCCTACAATAGGCTTAAAAGGCATTATGAAGCAGGTAATGGTGAAGGTGAGGTATACAGGCCAGGTTTCAAATTTACACCAATACCAGAAGAAGATTTCCATATACTAACTAAAGTAATAGTAAAGAAAAGAGAAAGTAAAGGTAAAGGGGTGCCAGCTGGGGGAAAGGGTGGAAAGACAGTTGATGGAATCAATAAAAAAGAGAAAAAAGAAAAACCAAGTTCTGCTGCAGGCATGCGTAAGTCAGTGAAGGGGAAAATGAAAAGGAAATGGTCACTTCTTGAGGAGGGCAATGCAAATGTCACTTCACCTAACAAGATGCCAGCTGTGGTCAGGGATAATAAGCGACACAAAACACAAAACAAGAAGCGATGTGCTCTGTTGGTTCGCAATGCTAAGGAAGAGGTAGATTCAGAAGTTGATGGATATGTGCTGTACAGTGGGAAGCGAACTGTGCTTGCCTGGATGATTGATTTGGGCACAATTTTCCAAAATCAGAAGGTTCATTATATGCAACACGAATGGAAATTGGATGGTGAGATCACAAGAGATGGCATTCATTGTGCATGCTGTAATGAAATCGTAACAATTTCAGACTTTGGAGCTCATGCAAGCAGCGCTCACTCTGATCCTCTTAAATATATATATAGAGAGGAAGGAACTTCTCTCTTACAGTGCCTGCTAGATTCTTGGAATAAACAAGATGAATTTGAACGTAAAGGTTTTCATTTTGTTGATGTTGCGGGTGACGATCCAAATGATGATACATGTGGTGTCTGTGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCAACATTCCATCAAAGCTGCTTGGATATAAAAAAGTTCCCATCTGGTGACTGGCACTGCATTTATTGCTGTTGCAAGTTTTGCGGGTTGGTTGGCGGAAGTTCAAACCAAAGGGATGTCTATGATGATTTTACTGTGTCTACATTGCACACATGCCATTTATGTGAGGAAAAATATCACAGATCCTGTATTGAGGCAAATGGTGCCAAGATTAATGATTCCAGGGATGCCTTTTGTGGAAACAAATGCCAAGAGTTATCTGAGAAACTTGAGTTGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTGTACTTTTATTCGGCGGTCAGATGTTGGCTTTGATGCTTCTCAGATAAAAACTCAGATGGTTGAATCTAATGCCAAGCTGGCTCTGGCATTATCAGTAATGGATGAGTGCTTCATGCCGTATATCGATCAAAGAAGTGGGATTAATCTGATCCACAGTATTCTGTATAATTGTGGGTCAAACTTCAAACGTCTGAACTATAGTGGGTTTGTAACTGCAGTTCTAGAGAGAGGTGATGAGATCATCGCTGCTGCATCTATTAGAATCCACGGGAACCAACTTGCAGAGATGCCATTTATCGGGACCCGCAATATGTATAGGAGACAAGGAATGTGCCGTCGGCTTCTAAATGGCATTGAATGGGCACTTAGCTCTTTAAATGTTGAGTTATTGGTCATACCATCCATCTCAGAACTCAGAGAAACTTGGACTAATGTTTTTGGGTTTGAGCCACTGGAATTGACTAACAAACAAATAATAAAGAACATGAATCTGTTGGTATTCCCTCATGTAGATATGTTACAGAAGAAGATATCAAAGCATAAATTCGCTGATAAAGATTTGATTCCTACAGAAGTTTCCAATCTTAAGAAGAATCATACTCTACACAAGGTAGAAAATTGGGACGGGACAGGCTCAGTGAATACATCTCCAAAAGTGGTCACATGTCAAGTTGAATGTCAGGCTGTTCATGAAGATTTGGCAGTGGACGACAAAAGTACTGCAAATGCCTGTAAGAATGTGATTGATTCTTGTTGTCAAGCTGAAGATACAAGTACAAGTAAGAATGCTAGTTATGATTGCGTCTTGCTGAACCATGATGAGAAGCCAATAGATTTGGACAGCCAATCGAACAGTTGTTGTGTTCCTTATGAGGAAAGGCAATGTCTCAGTATCTCTCGCACTGACACTGAAACTACTGAACAACGTGATGTTGATGCTCTGTTGGAGGTTACTGAAAACTTTCCCATTGAGGTCAAAGTAGCATGTGAGGTTGTTTCAAACAACAATACTACTGAAAATTCTGCACCCTGTGGGATGGAAAGTATTCCTATTGAATCACAAATTGTGTTTACTACAAGGGAATCAAAAAATTCTGCTGACAGTATACACCATGATTCACATAAGGTTTATGACAGTTGTGAACTGAGAAGCAAGACTGATTGTGTTCAACCGTACTTTATAGGATCAAAAGAAGTAGATGCTGAACCTGTTAATGGCAGCAGTTCTCATTCTAGACCCAATGGTGATGGTGCCTCTGGTGAAGCAATTTCCACAACCAACAGCTTGATGGACGTTACATCACAGAACATTACCAAAGGTTTGCCTGTTAATTGTGAAAAAAATTCTAGTGTTGTTAGTGTGCCAAATGCTGCTGATGAAGTAGAATTATGTACTGCCAAAACGTCCATTCTTCAGACAAACATTACTCGCGGAGATTGCCAATCCATACAAGTATCTTCTGATATTTGTGGGAAGATTGCACATGGTGTCAATGAAAGGGATAAAGCATCTAGTCAAGCTGAGGCCGATTTCCTTCCTGCTGATACAGACGTAGTTCCCAATAATAAACCTTGGATGGAGGGGTCTTCAGAACTAGCTGAGCCTGATTTGCAGGTTGATCAAACTGCACGGAGCAACGGGACATCCTTGAGGGGCCTGAACACAGCTTCTGGTGCGACTCTTCACTGGGCATCTGCTGGCAGTACTTCATGTGGTAGTACTGAGGGGATAGTTCTGTCAAACCAAGCCAGTTAA 4044 0.4164 MREGLRSRTRLGKISGSEGVVHKERFDVKNEALDSVGEGLGAKNLNIEKKGEVERAVKEECDLDLDVSSGGNVDLDENGNNGSGGSIVEADLNRKVNEVSIGDGNVDLDENDNNRSGGIVETDLDRKVNEVSIGGRVLRPRSRKGDDKKSYNGENDGVYSGNNRGHGEFERIKVEECEEAHEDGHENERVKVKKEGNGKINLKRKRGRPPKTEMKDQDQPPKTEMKYQDQSPRKRGRPPKAGHQDHHLTMVHNRKGKVGIRKGKVDLTIKDGTNVNAIDDEQCGRSSGKELKKKGFSSTKKNKLGKVLKTEDNGAASPLRSNTVNAVVAEKSGKNKVKQLVRDQIMERLSAAGWTVDYRPRNGRQYKDAVYVSLDGKTHWSITLAYNRLKRHYEAGNGEGEVYRPGFKFTPIPEEDFHILTKVIVKKRESKGKGVPAGGKGGKTVDGINKKEKKEKPSSAAGMRKSVKGKMKRKWSLLEEGNANVTSPNKMPAVVRDNKRHKTQNKKRCALLVRNAKEEVDSEVDGYVLYSGKRTVLAWMIDLGTIFQNQKVHYMQHEWKLDGEITRDGIHCACCNEIVTISDFGAHASSAHSDPLKYIYREEGTSLLQCLLDSWNKQDEFERKGFHFVDVAGDDPNDDTCGVCGDGGDLICCDGCPSTFHQSCLDIKKFPSGDWHCIYCCCKFCGLVGGSSNQRDVYDDFTVSTLHTCHLCEEKYHRSCIEANGAKINDSRDAFCGNKCQELSEKLELLLGVKHEIEDGFSCTFIRRSDVGFDASQIKTQMVESNAKLALALSVMDECFMPYIDQRSGINLIHSILYNCGSNFKRLNYSGFVTAVLERGDEIIAAASIRIHGNQLAEMPFIGTRNMYRRQGMCRRLLNGIEWALSSLNVELLVIPSISELRETWTNVFGFEPLELTNKQIIKNMNLLVFPHVDMLQKKISKHKFADKDLIPTEVSNLKKNHTLHKVENWDGTGSVNTSPKVVTCQVECQAVHEDLAVDDKSTANACKNVIDSCCQAEDTSTSKNASYDCVLLNHDEKPIDLDSQSNSCCVPYEERQCLSISRTDTETTEQRDVDALLEVTENFPIEVKVACEVVSNNNTTENSAPCGMESIPIESQIVFTTRESKNSADSIHHDSHKVYDSCELRSKTDCVQPYFIGSKEVDAEPVNGSSSHSRPNGDGASGEAISTTNSLMDVTSQNITKGLPVNCEKNSSVVSVPNAADEVELCTAKTSILQTNITRGDCQSIQVSSDICGKIAHGVNERDKASSQAEADFLPADTDVVPNNKPWMEGSSELAEPDLQVDQTARSNGTSLRGLNTASGATLHWASAGSTSCGSTEGIVLSNQAS. 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05772 1347 SUPERFAMILY FYVE/PHD zinc finger 633 686 IPR011011 -
Seca8g05772 1347 ProSiteProfiles Zinc finger PHD-type profile. 638 683 IPR019787 -
Seca8g05772 1347 Pfam Tify domain binding domain 563 612 IPR032308 -
Seca8g05772 1347 MobiDBLite consensus disorder prediction 166 197 - -
Seca8g05772 1347 CDD PHD1_AIRE 641 680 - -
Seca8g05772 1347 MobiDBLite consensus disorder prediction 73 87 - -
Seca8g05772 1347 CDD NAT_SF 836 884 - -
Seca8g05772 1347 SMART AT_hook_2 232 244 IPR017956 GO:0003677
Seca8g05772 1347 SMART AT_hook_2 203 215 IPR017956 GO:0003677
Seca8g05772 1347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 745 IPR013083 -
Seca8g05772 1347 MobiDBLite consensus disorder prediction 67 91 - -
Seca8g05772 1347 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 778 940 IPR000182 GO:0016747
Seca8g05772 1347 MobiDBLite consensus disorder prediction 445 461 - -
Seca8g05772 1347 MobiDBLite consensus disorder prediction 129 247 - -
Seca8g05772 1347 MobiDBLite consensus disorder prediction 1162 1186 - -
Seca8g05772 1347 PANTHER PHD FINGER PROTEIN 12 324 1143 IPR042163 GO:0003714|GO:0045892
Seca8g05772 1347 MobiDBLite consensus disorder prediction 207 247 - -
Seca8g05772 1347 MobiDBLite consensus disorder prediction 1165 1186 - -
Seca8g05772 1347 MobiDBLite consensus disorder prediction 431 466 - -
Seca8g05772 1347 SMART PHD_3 682 741 IPR001965 -
Seca8g05772 1347 SMART PHD_3 640 681 IPR001965 -
Seca8g05772 1347 MobiDBLite consensus disorder prediction 129 153 - -
Seca8g05772 1347 ProSitePatterns Zinc finger PHD-type signature. 641 680 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05772 Seca-Chr8 150023236 150032748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05772 166 947 PHD Transcription Factor Family AT5G36670 40.518 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05772 - - lang:109346644 1457.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05772 8 150023236 150032748 Seca8g05772 8 150023236 150032748 ECH