Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05752 ATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTTCATTTGCTTCTGCTCTACTTGTAAGGCACAGGCATGAAAACAAAAAGTATGTTCTCAAGAAGATCCGCCTTGCCCGCCAGACTGACAGAACCCGTAGATCTGCCCATCAGGAGATGGAGCTTATCTCTAAAGTTCGAAATCCCTTTATTGTAGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATTGTCATTGGCTATTGTGAAGGAGGAGACATGGCTGAAGCTATTAAAAAGGCTAACGGTATTCATTTTTCTGAAGAGAGGCTTTGTAAGTGGCTTGTTCAACTGCTGATGGCACTGGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACTAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATGTGATGATCTTGCTTCCTCAGTCGTAGGGACTCCAAGTTATATGTGCCCAGAGCTCCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTCTTGGAGCACAACATGAAATGAATGACATTTTAGTTTTCTTCTATCTGAATTTTGAGCAGGATATGCAAGCATTGATTAACAAAATAAACAAGTCTTTAGTGGCTCCACTACCAACAGTGTATTCTAGTTCTTTTCGAGGCCTTGTGAAGAGTATGCTACGGAAAAATCCAGAGCTTAGGCCTAGTGCTGCAGAGTTACTAAACCATCCACATCTTCAACCTTATATTCTTAAAGTCCATCTAAAACTAAATAACCCCAGAAGAAGTACTTTTCCATTTCAATGGCCTGGCTCTAACTATGCAAGGAGATCTCAGTTTATAGAGCCAGAATCTGTTTCCACTCTTTCTGACAGAGATAAAAGATTGTCATTCAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAATTAGGTTCTCTGTGTTCTACTCAAAGAGCACGAAGATTCTCTGCTTGTTTGAAAGAGAAACACTATGAACTATTTGTTGGCTGTGTTAGTGAAGAATGCAATCGTAACAAGTCAAAAGACACAAAGCTGTCAGCTGTTGATAGGACCATTAGGACACCAAGATTGAGAGCAGCCAAGGAGCCTGCCACCCCCCGACGATACACATTACCATCAAAGATATCCCATACTGGTTCCAAGCGTGATTCACTTCCAGCATCTTCTACTCCAGCTGGTAAATTTACGCCACCAACTCGCAGAGCTTCCCTTCCACTTCCTACGAGATCCATGGCCACAACCACCCCTTATAGAGCCAATATTGGTCTTCTTCAAAGTGTGGACTCTCCTGATATTTCTGTTAATGCACCACGAATTGACAAGATTGCTGAATTCCCTTTGGCCTCTGGTGAGGATCCTCTCTTCCCTGTCCGTGGAACTTCATCAACATCAGCTCAGTGCTCTTCTGGTGGTTCCTTAAGGAGTACTGACTGCTTAATCACAAAGGACAAGTGTACAATCCAGGTTGTGGACAAAGGTGCCCCTACCAGTGGCAGTGATGCTCATGCTTGTCCTGGTACTGTAGTTTCATACGGCAATGAATGCTCTGAACATGTGACAACTGCTGTTTCAAGCCATTCCTCTGCCGAGTCTCGTCAGCGCAGGTTTGACCCTTCGTCTTACCAGCAACGTGCGGAGGCATTGGAGGGGTTGCTTGAGTTCAGTGCGCGGCTCCTACAACAACAGAAGTTTGAAGAGCTTGGGGTGTTGTTGAAGCCATTTGGGCCCGAGAAGGTATCTCCAAGGGAAACAGCTATTTGGTTGACCAAGAGCTTTAAAGAAACTGTGGTCTAA 1917 0.4335 MEQYEILEQIGKGSFASALLVRHRHENKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKANGIHFSEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALGAQHEMNDILVFFYLNFEQDMQALINKINKSLVAPLPTVYSSSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKVHLKLNNPRRSTFPFQWPGSNYARRSQFIEPESVSTLSDRDKRLSFSNDRALNPSISGTELGSLCSTQRARRFSACLKEKHYELFVGCVSEECNRNKSKDTKLSAVDRTIRTPRLRAAKEPATPRRYTLPSKISHTGSKRDSLPASSTPAGKFTPPTRRASLPLPTRSMATTTPYRANIGLLQSVDSPDISVNAPRIDKIAEFPLASGEDPLFPVRGTSSTSAQCSSGGSLRSTDCLITKDKCTIQVVDKGAPTSGSDAHACPGTVVSYGNECSEHVTTAVSSHSSAESRQRRFDPSSYQQRAEALEGLLEFSARLLQQQKFEELGVLLKPFGPEKVSPRETAIWLTKSFKETVV. 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05752 638 SMART serkin_6 4 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05752 638 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca8g05752 638 Pfam Protein kinase domain 4 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05752 638 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Seca8g05752 638 CDD STKc_Nek 3 277 - -
Seca8g05752 638 Gene3D Transferase(Phosphotransferase) domain 1 80 289 - -
Seca8g05752 638 MobiDBLite consensus disorder prediction 399 448 - -
Seca8g05752 638 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Seca8g05752 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Seca8g05752 638 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 594 - -
Seca8g05752 638 SUPERFAMILY Protein kinase-like (PK-like) 1 336 IPR011009 -
Seca8g05752 638 ProSiteProfiles Protein kinase domain profile. 4 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05752 638 MobiDBLite consensus disorder prediction 412 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05752 Seca-Chr8 149800711 149806735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05752 10 278 MAP Kinase Kinase Kinase AT1G53570 28.467 2.48e-32 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca8g05752 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05752 K08857 - gmx:100810347 1060.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05752 8 149800711 149806735 Seca8g05752 8 149800711 149806735 ECH