Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05745 ATGAGGACTTTCTTTACTGCAGAATCATGTAAAGAAGCGCACCCAAATGCTCTAAATCCACAGTCCTGGCTCCAAGTTGAAAGAGGAAAGCTTCCCAAGTTGTCTTCACAGTCCTCCTCTACATCAATAGAATCTCTAATCAAGGTCCCACAACCACCTATACTCCCATTCTTTAAACCTGTTGATTATGTGGAAGTTTTAGCTCAAATCCATGAAGAACTTGAGTCTTGTCCTCCACAGGAGCAGTCAAATCTATTTTTGTTGCAATATCAAGTCTTTAGGGGCCTTGGGGACATTAAATTGATGCGAAGAAGCCTCAGGGAAGCTTGGCAGAGAGCCAAAACTGTTCATGAGAAGATAATATATGGGGCATGGTTGAAGTATGAGAAGCAAGGGGAAGAGCTAATTGCTGGCTCGCTCACAGGTAAATGTGAAAAGGAATATGAACCCATAGATGTAGAATCTCATATTATTTTTGATGTAAATGTACGTTCCCAGGAGAGAGTTTTGATGAATGGGGACCACACTTCACATGTTATTTTTACTATTGGAAATGAGAAGATAATTTGTGATAGACGAAAAATTTCTGAGCTTTCAGCACCATTTCATGCAATGCTGAATGGGTGTTTCAGGGAATCATTTTCTGAGGCCATAGATTTGTCTGAAAACAATATCTCTCCTTCAGGTATGAGGGCAATAAGTTATTTCAGTTTGACAGGAAGTTTACTTGAGGTCCCTCCAAATCTTTTGCTGGAGATATTAGCTTTTGCCAACAAGTATTGTTGTGATAGACTAAAAAAGGCTTGTGATAAAAAACTTGCATCCTTGGTTTCCTCCAAAGAGGATGCTGTGGAGCTCATGGAATATGCTCTTGATGAGAATTCAGCTGTCCTTGCAGCTTCTTGTTTACAAGTCCTTTTACGTGATCTTCCCAACTGCTTGAGTGACAATCAGGTGGTGGAGTTATTTGTTCATGCTAATAGGCAGCAATTGGAAATCATGGTTGGGCCAGGTTTATTTGCACTTTTCTGTTTCTTAAGTGAAGTTTCTGTGAACCTTAATTCTAGTTCAGACACAACAGCTCATTTCCTGGAACGGTTAGTTGATTTTGCTGAAAATGACAAGCAAAGACTGCTGGCATTTCATCAATTGGGATGTGTAAGACTCTTAAGGAAACAATATGATGAAGCTCATTGCCTTTTTGAGGGGGCTGTAAATGCAGGTCATTTTTATTCTGTTGCTGGTTTAGCTAGACTGGACTATATAAAGGGTGAAAAGCTTTTAGCTTATGAGAAGATCAGCTCAGTCATTTCCTCTGTTACACGACCTGGATGGTTGTACCAGGAAAGATCACTATACTGTGATGATGATTTGAGGTGGAAAGACCTTGAAAAAGCAACTGAACTGGACCCTACTCTTGTATATCCCTACATGTATAGGGCTGCTTCTTTAATGAAGAAGGAGAATTCTCAAGGTGCACTGGCTGAAATCAATCGGATTCTTGGCTTCAAACTTTCATTAGAATGCTTGGAGCTACGGTTTTTAATCTATCTGGCTCTTGAGGACTACAAAGCAGCCCTCCGTGATGTTCAAGCAATTCTTACTCTATGTCCACATTATAGAATGTTTGAGGGGCGCGTTGCTGCATCTCAACTTCGTACTCTTGTGCGTGAGCATGTTGAACGTTGGACAACAGCAGATTGTTGGGCACAATTATATGACTGTTGGTCTGCGGTTGATGATATTGAGTCTCTATCTGTTATTTACCAGATGCTTGAATCTGATGCAGCAAAAGGTGTTCTATACTTCAGACAGTCACTGCTTCTCCTCAGGCATGTTATGAATGTGGGATTACTGCTAAACTGTCCTGAGGCAGCTATGCGGAGTTTACAGTTAGCTTGGCAACATGCATCAAGTGAGCATGAACGACTTGTATATGAGGGGTGGATCTTGTATGATACAGGTCATTACAAGGAAGGGCTCCGAAAAGCTGAAGAGTCTCTTAGTATTAAAAGGTCTTTTGAGGCCTACTTCCTGAAGGCCTATGCATTGGCCGACTCTAGTCAAGATTCATCACGTTCTTCAACTGTTATTTCACTTCTGGAAGATGCCTTGAGGTGTCCTTCCGATAATCTGCGCAAAGGTCAGGCCCTGAACAATCTTGGAAGTGTTTTTGTTGACTGTGGGAAATTGGACTCAGCAGCTGATTGCTATATCAAAGCCCTTAATATCCAGCACACCCGAGCTCATCAGGGTCTTGCTCGTGTTCATTTTCTCAAAAATGATAAGGCTGCTGCTTACAAGGAAATGACCAATCTTATTGAGAAGGCTAAAAACAATGCATCAGCATATGAGAAGAGGTCTGAGTACGGTGATCGTGAACACACAAAGGCAGATCTGGAGATTGTGACTAGATTAGATCCACTTCGGGTGTATCCTTATAGATATCGAGCAGCAGTTTTGATGGACAACCATAAGGAAGATGAAGCCATTGCTGAACTCTCGAGAGCAATTGCATTTAAAGCTGATTTACACCTCTTACATCTACGTGCAGCATTCCATGAACACAAGGGGGATGTCTTAGGTGCGCTAAGAGACTGTCGTGCTGCACTCTCAGTGGACCCAAACCACCAAGAAATGTTGGAACTTCACACTCGTGTTAATAGCCATGAGCCTTGA 2679 0.4177 MRTFFTAESCKEAHPNALNPQSWLQVERGKLPKLSSQSSSTSIESLIKVPQPPILPFFKPVDYVEVLAQIHEELESCPPQEQSNLFLLQYQVFRGLGDIKLMRRSLREAWQRAKTVHEKIIYGAWLKYEKQGEELIAGSLTGKCEKEYEPIDVESHIIFDVNVRSQERVLMNGDHTSHVIFTIGNEKIICDRRKISELSAPFHAMLNGCFRESFSEAIDLSENNISPSGMRAISYFSLTGSLLEVPPNLLLEILAFANKYCCDRLKKACDKKLASLVSSKEDAVELMEYALDENSAVLAASCLQVLLRDLPNCLSDNQVVELFVHANRQQLEIMVGPGLFALFCFLSEVSVNLNSSSDTTAHFLERLVDFAENDKQRLLAFHQLGCVRLLRKQYDEAHCLFEGAVNAGHFYSVAGLARLDYIKGEKLLAYEKISSVISSVTRPGWLYQERSLYCDDDLRWKDLEKATELDPTLVYPYMYRAASLMKKENSQGALAEINRILGFKLSLECLELRFLIYLALEDYKAALRDVQAILTLCPHYRMFEGRVAASQLRTLVREHVERWTTADCWAQLYDCWSAVDDIESLSVIYQMLESDAAKGVLYFRQSLLLLRHVMNVGLLLNCPEAAMRSLQLAWQHASSEHERLVYEGWILYDTGHYKEGLRKAEESLSIKRSFEAYFLKAYALADSSQDSSRSSTVISLLEDALRCPSDNLRKGQALNNLGSVFVDCGKLDSAADCYIKALNIQHTRAHQGLARVHFLKNDKAAAYKEMTNLIEKAKNNASAYEKRSEYGDREHTKADLEIVTRLDPLRVYPYRYRAAVLMDNHKEDEAIAELSRAIAFKADLHLLHLRAAFHEHKGDVLGALRDCRAALSVDPNHQEMLELHTRVNSHEP. 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05745 892 Gene3D Tetratricopeptide repeat domain 788 891 IPR011990 GO:0005515
Seca8g05745 892 Gene3D Potassium Channel Kv1.1; Chain A 167 317 IPR011333 -
Seca8g05745 892 SMART tpr_5 507 540 IPR019734 GO:0005515
Seca8g05745 892 SMART tpr_5 641 674 IPR019734 GO:0005515
Seca8g05745 892 SMART tpr_5 715 748 IPR019734 GO:0005515
Seca8g05745 892 SMART tpr_5 811 844 IPR019734 GO:0005515
Seca8g05745 892 SMART tpr_5 846 877 IPR019734 GO:0005515
Seca8g05745 892 Coils Coil 760 787 - -
Seca8g05745 892 ProSiteProfiles TPR repeat profile. 715 748 IPR019734 GO:0005515
Seca8g05745 892 Gene3D Tetratricopeptide repeat domain 609 779 IPR011990 GO:0005515
Seca8g05745 892 SUPERFAMILY POZ domain 163 274 IPR011333 -
Seca8g05745 892 SMART BTB_4 177 277 IPR000210 GO:0005515
Seca8g05745 892 Gene3D Tetratricopeptide repeat domain 358 585 IPR011990 GO:0005515
Seca8g05745 892 SUPERFAMILY TPR-like 460 786 IPR011990 GO:0005515
Seca8g05745 892 PANTHER ETO1-RELATED 1 891 IPR044631 GO:0010105
Seca8g05745 892 Pfam BTB/POZ domain 170 273 IPR000210 GO:0005515
Seca8g05745 892 SUPERFAMILY TPR-like 699 883 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05745 Seca-Chr8 149750154 149754981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05745 716 879 Glycosyltransferase AT3G04240 27.011 4.17e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca8g05745 BTB 3.1e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05745 - - gmx:100785039 1540.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05745 8 149750154 149754981 Seca2g04292 2 127477708 127485708 PCT