Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05744 ATGAAGACGACAATTTCATCCCAACACCTATTATTGGCATTAGGGTTTCTGTTTTCTGCCACAATTCCCTTCGCTCACGGGGAATCATCTACATGCTTGACGGTCTACAAGAACGGCGGTGCTCCGGCGGTGTTCCAATCCCCAAAATGCCCCCGCTGGAAGCTCTCCGATTACGATTCTCCCCCCGAAACCACCGCGCGTTGCCAGTCCGCCGTGCTCCAGGGCCGCAGAAACTCTCAAGAGGATCGCACTCTTTGCGTCCTCGATCTTCGCATTCCCTTCCCCAGTGCGGTCGGGATCAAGGAGGTTGTGGTTGGGATTATGGCTGTTTTCGATGGTCATAACGGCGCAGAAGCTAGTGAGATGGCATCGAAACTTTTGGTGGAGTATTTCGTTCTGCATACTTCTTTTCTCCTTGATGCAACGTATTCTGTTGTATCCAAGACGTCGACAGGAACATTGCTTAACAAGAGAGATCCTGACCACGTAAATATATTGCGTAGATGGAAAGAGATTCTAGGTTGGCAATGGCATGAACTGCATCCTGAAAGGTTTCAGAATACATTTTCTGCAAATTTTGATGATACTTTTCACTTGGAAATTTTGAAGGAAGCATTGTTGAGAGCGATCCATGATATTGATGCAAAATTTTCTGAGGAAGCCTTTAGAAATAGTCTTCATTCAGGATCTACGGCAACCGTCATATTGGTTGCAGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCTTCTTGTGCTCTGAAAAATTTCAGTCTCCTAGAGAGGCTAAAGCCTCATTGTTAAAGCTATACAGGCAGAAAGAGTATGAAGGTTCTGTTTCCGTGTGGGATCGGGAAAAGTACAGATTGGCTTCTTCCCATGGACTCACTCATTTTGCAGTGAAGGAATTGACCAGTGATCATCATCCTGACAGAGACGATGAAAGAATTCGAGTGGAATCATCTGGTGGTCAAGTTCTAAATTGGGGTGGTTTACCTCGTGTAAATGGTCAGCTAGCTATTACACGGGCTATTGGTGACGTGTTCTTTAAAAGTTATGGCGTTATATCTGCACCGGAAGTGACTGATTGGCAACCTCTGACTGTTAATGATAGCTATTTGGTGGCTGCATCTGATGGTGTATTTGAGAAGATGAATGTGCAGGATGTTTGTGATTTGTTGTGGGAAATACACTGTTACAGTAGCATGAGATCGGAGTGTACCCCTTCATCTTCCTACTCATTGGCAGATTTTATTGTTAATACTGCCTTCAAAAAGGGCAGTATGGACAATATGGCAGCAGTTGTCGTTCCTCTGGAATCTACCAAATCTTCTGCAAACTCGCCCAGAAGCTATACTGAAAAGAGGGATTCAGGTTTCCCATTATTTGGTCTGCAGGATCCTGCTTCCAGGAGCTCAGCTAATGACATCACATCTGATCTAATGCACTTGGAGCATCCTCATCTGGTAGATACCAAGTTTAAGCGAATATTGGTTGAAGTAAAACATGGCGATTTTGGATGTTTTTATTTATCTGAAAATCTTGATGAACCTGCGGACTCTAAGCGGCCTGCCAAAAAAACTGACTGGGAAGACTATTTGTATGAACTACCTCAGCCTCTACCAGATGCCCTTCATCAACATACTGCAATAGATGGTACTTTAAACTTGTACAACAACCAAAACTTTTGCTTTCACCTTGATCCGACTGTGAATGCAGCTAAAGACCAATGCATAAACCCTGAAGGCTTTGCCAGTTTTATTGGTCTTCTTGAATCGATTCCTTTACCCGATACTGGTTCAGATAATGGGTCTTCTGATTACTCAATACCTGATTTCAGGTATGTATTAAGGAAGAATTTTGGTCGTGGATCATATGGTGAAGTATGGTTGGCTTTTCATTGGAATTGTAATCAAGACAATAATGCTGAAAAAATGAGCAAGGATGAGAATAATAGAAAGAACAGCTCAACTACTCCTGATTGTCAAGATGGTCCGTCTAACTACACCCTGTACATTTTGAAACGTATAATGGTAGAGAGAGGGTCCGCTGTTTACTTAAGCGGGCTGAGGGAGAAGTATTTTGGAGAAATTTTCTCAAATGCCTCTACATGCTTAGAAGATCTGCTGTCAGCTGGAAAATCGAACTGTGTCATGGAAACATCACAATTTGGGTCCGAGAATTCATTTTCAAACAAATTTCGACTGCAAAGAGCCACATATGAAGAAGGTTTGAACCATATCGCAAGATATGTGGAGTCTTTTGAGTCTCGATCCAATGAAATATGGCTTGTATTCAGTTTTGAAGGAGTGTCATTGTCAAAACTTTTATATACTGTGGAAGATGCATCTGATACTTCTGAAAAAGAAAGACTTGAGCAAGTAAAAGTTCAAATACTACGTCCATCAAATTGGTGGCATTGGTTGAAAACAACAGAAGAAGGGCAAGAGGAAATGCGCAAACTTATCTGGCAGCTGTTATTGGCACTCAAGTCTTGTCACGATCGCAATATCACACACAGGGACATTAAACCTGAGAATATGGTGATATGCTTTGAAGATCAGGAGACGGGGAGATGCTTGAAAGAGATTCCAACAAAAATTAATAAATCTTCAACCAAAATGCGTATTATTGACTTTGGAAGTGGAATTGATGAATTCACATTAAAGCATTTATATGGTTCTACTGGGCCTTCTAGAGCTGAACAAACTTATGAGTATACACCTCCTGAAGCTTTGCTGAATGCTACATGGTATCAAGGGCCAACAAGCTCAACTTTGAAATATGACATGTGGAGCGTTGGTGTTGTGATGTTAGAGTTGGTCCTAGGGACACCAAATGTTTTCCAGATAAATGCTTTAACACGTGCTCTTTTGGACCGGCATCTTGACGGATGGAATGAGGGTGTGAAGGAGCTGGCATACAAACTTAGATCATTCATGGAATTGTGCATCTTAATCCCTGGGATTTCTGGCAGTTCATCAAAAAAATATCACACAGTGAATCAAGTTGGAGTTTCACCCGCATCCTGGAAATGCTCTGAAGAATTCTTTTCTCGTCAAATTAAGACTAGAGATCCTCTTAAAATGGGTTTTCCAAACATCTGGGCTTTACGGTTAGTTCGCCAGCTGTTACTCTGGGACCCAGAGGATCGGCCAAGTGTTGATGAGGCACTGCAGCATCCCTATTTCCAGCCTCCCCCAAGAGGATGA 3219 0.4231 MKTTISSQHLLLALGFLFSATIPFAHGESSTCLTVYKNGGAPAVFQSPKCPRWKLSDYDSPPETTARCQSAVLQGRRNSQEDRTLCVLDLRIPFPSAVGIKEVVVGIMAVFDGHNGAEASEMASKLLVEYFVLHTSFLLDATYSVVSKTSTGTLLNKRDPDHVNILRRWKEILGWQWHELHPERFQNTFSANFDDTFHLEILKEALLRAIHDIDAKFSEEAFRNSLHSGSTATVILVADDKILVANIGDSKAFLCSEKFQSPREAKASLLKLYRQKEYEGSVSVWDREKYRLASSHGLTHFAVKELTSDHHPDRDDERIRVESSGGQVLNWGGLPRVNGQLAITRAIGDVFFKSYGVISAPEVTDWQPLTVNDSYLVAASDGVFEKMNVQDVCDLLWEIHCYSSMRSECTPSSSYSLADFIVNTAFKKGSMDNMAAVVVPLESTKSSANSPRSYTEKRDSGFPLFGLQDPASRSSANDITSDLMHLEHPHLVDTKFKRILVEVKHGDFGCFYLSENLDEPADSKRPAKKTDWEDYLYELPQPLPDALHQHTAIDGTLNLYNNQNFCFHLDPTVNAAKDQCINPEGFASFIGLLESIPLPDTGSDNGSSDYSIPDFRYVLRKNFGRGSYGEVWLAFHWNCNQDNNAEKMSKDENNRKNSSTTPDCQDGPSNYTLYILKRIMVERGSAVYLSGLREKYFGEIFSNASTCLEDLLSAGKSNCVMETSQFGSENSFSNKFRLQRATYEEGLNHIARYVESFESRSNEIWLVFSFEGVSLSKLLYTVEDASDTSEKERLEQVKVQILRPSNWWHWLKTTEEGQEEMRKLIWQLLLALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEIPTKINKSSTKMRIIDFGSGIDEFTLKHLYGSTGPSRAEQTYEYTPPEALLNATWYQGPTSSTLKYDMWSVGVVMLELVLGTPNVFQINALTRALLDRHLDGWNEGVKELAYKLRSFMELCILIPGISGSSSKKYHTVNQVGVSPASWKCSEEFFSRQIKTRDPLKMGFPNIWALRLVRQLLLWDPEDRPSVDEALQHPYFQPPPRG. 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05744 1072 CDD PP2Cc 67 441 IPR001932 -
Seca8g05744 1072 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Seca8g05744 1072 Gene3D - 63 449 IPR036457 -
Seca8g05744 1072 SMART PP2C_4 59 439 IPR001932 -
Seca8g05744 1072 SMART serkin_6 617 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05744 1072 SUPERFAMILY PP2C-like 66 443 IPR036457 -
Seca8g05744 1072 MobiDBLite consensus disorder prediction 646 665 - -
Seca8g05744 1072 Gene3D Transferase(Phosphotransferase) domain 1 800 1067 - -
Seca8g05744 1072 SUPERFAMILY Protein kinase-like (PK-like) 616 1068 IPR011009 -
Seca8g05744 1072 PANTHER PROTEIN PHOSPHATASE 62 440 IPR015655 GO:0004722|GO:0006470
Seca8g05744 1072 Pfam Protein kinase domain 816 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05744 1072 ProSiteProfiles Protein kinase domain profile. 617 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05744 1072 Pfam Protein phosphatase 2C 201 434 IPR001932 -
Seca8g05744 1072 ProSiteProfiles PPM-type phosphatase domain profile. 67 441 IPR001932 -
Seca8g05744 1072 FunFam uncharacterized protein LOC106771884 isoform X8 806 1067 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05744 Seca-Chr8 149730737 149747671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05744 681 1070 PP2C-type Phosphatase Gene Family AT3G63340 65.990 1.37e-178 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Seca8g05744 Pkinase 1.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05744 - - gmx:100781476 1880.53