Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05743 ATGAATTATATGTACTCAGTGAAAGAAGAATACTTGGAAGCATCAACATCATCCTTCCAATCAGGAGGTGAATACCCATCAATGATTCCACCTCCCCAGCCAATGGAGGGACTTCATGAGATAGGACCCCCTCCATTCCTCACCAAAACGTTTGATGTGGTGGACGACCCAACTACCAACCATGTAATTTCATGGAGCAGAGGTGGCACCAGCTTTGTAGTTTGGGATCCACATGCCTTCTCCACAACTCTCCTTCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTAAGGCAACTAAACACTTATGGTTTTAGAAAAATTGATCCAGATAGATGGGAATTTGCAAATGAAGGATTCGTCAGAGGGCACAGGCACCTTTTGAGGAACATAAGGAGAAGGAAAGCACCTTCTCAGCCTGCTCCTTCCCAACAAGCACAAGGTAGTCATTGTGTTGAAGTTGACCGTTTTGGACTTGATGAAGAAATTGAACGTTTGAGGCACGAAAAGAGGGTGTTGATGATGGAGCTAGTGAATCTTAGACAGCAGCAACAGAATAGCAGAGTGTGTCTTCAGGAGATGGAGCAAAGGTTACATGGGATAGAAACCAAGCAGCAACAAATGATGTCATTCTTAGCTAGAGCAATGAAAAACCCTGCCTTTATCCATCAATTACTCCAACAGAAAGAGAATAGAAAGGAGCTTGAAGAAGCCATGACCAGAAAGAGAAGACAAATTGAACTAGGAACTACAGGTATTGGAGAATCAAGTAGTGAAGGTGAAGGAAGGAGCAGTGTTAAAGTTGAGCCTTTAGAATTTGGGGTGTCAGAGTTGGAAATGCTAGCAATGGAAATGCAGGGTTTAGGAAGGGTCAGGAGAGAGCAGGAGGAAGGAGTAGAGGCACTAGAATCACAAGAGAGGATGGAAAGAGAATTTGATGAAGGGTTCTGGGAAGAATTACTGTTTAGTGAGAAAGTTGAGGGTCGATTAGACATTCCAACTGTTGAAGATAAAGATGAAGATGTCAATGTGTTGGTCAATCGCTTTGGTTGCTTGGATTCAAGTCATTAA 1074 0.4283 MNYMYSVKEEYLEASTSSFQSGGEYPSMIPPPQPMEGLHEIGPPPFLTKTFDVVDDPTTNHVISWSRGGTSFVVWDPHAFSTTLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFVRGHRHLLRNIRRRKAPSQPAPSQQAQGSHCVEVDRFGLDEEIERLRHEKRVLMMELVNLRQQQQNSRVCLQEMEQRLHGIETKQQQMMSFLARAMKNPAFIHQLLQQKENRKELEEAMTRKRRQIELGTTGIGESSSEGEGRSSVKVEPLEFGVSELEMLAMEMQGLGRVRREQEEGVEALESQERMEREFDEGFWEELLFSEKVEGRLDIPTVEDKDEDVNVLVNRFGCLDSSH. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05743 357 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 32 271 IPR027725 -
Seca8g05743 357 PRINTS Heat shock factor (HSF) domain signature 46 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g05743 357 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g05743 357 PRINTS Heat shock factor (HSF) domain signature 97 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g05743 357 Coils Coil 164 184 - -
Seca8g05743 357 Gene3D - 39 136 IPR036388 -
Seca8g05743 357 Pfam HSF-type DNA-binding 46 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g05743 357 Coils Coil 226 246 - -
Seca8g05743 357 SUPERFAMILY "Winged helix" DNA-binding domain 42 135 IPR036390 -
Seca8g05743 357 FunFam Heat shock transcription factor 1 39 136 - -
Seca8g05743 357 SMART hsfneu3 42 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g05743 357 ProSitePatterns HSF-type DNA-binding domain signature. 85 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05743 Seca-Chr8 149724985 149728284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05743 26 356 HSF AT3G22830 50.815 7.37e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca8g05743 HSF_DNA-bind 1.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05743 K09419 - gmx:100794264 493.041