Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05742 ATGATCATATTGGAATTGCTCATGGATTGGCTTAATTATCTTCATTATGATTGTGATCCTGTCATAATGCACCAAGACATCAAAACAAGCAACATACTTCTAGAGTCTGAAATGGAGCCTAATATTTCAGATTGTGGTGATGCTACTTTTGGATCAGGCTTCTACCTCAACACAATCAATATTTGTTATTGGTATAATTGGTTATATTGCACCAAAGAATGCTTATACAAGAGCAAAGGTTAA 243 0.3416 MIILELLMDWLNYLHYDCDPVIMHQDIKTSNILLESEMEPNISDCGDATFGSGFYLNTINICYWYNWLYCTKECLYKSKG. 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05742 80 Gene3D Transferase(Phosphotransferase) domain 1 1 78 - -
Seca8g05742 80 ProSiteProfiles Protein kinase domain profile. 1 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05742 80 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 11 51 IPR047117 -
Seca8g05742 80 SUPERFAMILY Protein kinase-like (PK-like) 11 76 IPR011009 -
Seca8g05742 80 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05742 Seca-Chr8 149723460 149723849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05742 11 48 Receptor kinase-like Gene Family AT1G73080 60.526 2.59e-11 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Seca8g05742 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05742 - - gmx:100802056 67.3958