Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05741 ATGTTCCCTGCAGTTATGTCCAATTCTACTACTTCTTTATCTGAAGAAGCCACAAGAATTCATCAGGACTTGGACTTGGGTAGATTAAATCACCTTGTCTCAAACATTTCTCCTCAGCTTCCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGTAACCCAGACCCAGATGCTGAAGTGATAGCCTTATCCCCAAAGACCCTTTTAGCTACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGATCAGAATCTTCAGCTTCATAGGAGAGGCCATAACCTGCCTTGGAAGCTGAAGCAAAGGAACAGCAAAGAGGTGAAAAAGAGAGCCTATGTTTGCCCTGAGCCTTCATGTGTTCACCACAACCCATCAAGGGCTTTAGGGGATCTTACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGAACCCTTTTTTCCAGGTGTGAAAAAAACTGCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTATCAGCAAACCAAAACACAAACCCATTCGTCCAATCTCTCTTCCTTTTACCAACCCAACAACATACCTTCCAAAACCTCAATCCCTGGGACCCATCTCATCAACAAAACCCTAACCCTAACAACCTCCACAACATCAAGCCTGAAGCTCAATCTCAAATAACCTTTCAGATCCCCAACAACCTCTCTGGTTCTGTTTCTTCTTCTCCTCCTCCCCAATTTCTTCACCACTCACCCTTATTCCACGTGCGCAGTCAACCCTCCTCCAATGCTGCTGCCACGTCAGCACACCTCTCAGCCACTGCACTGCTCCAGAAGGCAGCGACCGTTGGTGCGGCTGCCATCACAGGGCAACAGCAGGCAATGGGCGAGTTTGGATCGGTGAGTCAGCTTGACTCGGTGGTAGCTGATCATCAGTACGTGAACATGGGAGGAGGGCTCATGAGCTCCAAGAACGACGGTCTGACGAGGGATTTTCTAGGCCTTGCTGCTGCTAATGGAGGCGCGGTGGACGTTAGCGTAAACGTGAAGGATATGCTAACATTCACGGGAAGCGTAGGGTACCATCAGAACTCGCTGTTGAAGTCACAACAACAAGGTTTTGGATTCCTTGGGACAACCACTGCTCCTGAATCGTGGGGGAATTGTTAG 1290 0.4705 MFPAVMSNSTTSLSEEATRIHQDLDLGRLNHLVSNISPQLPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYKCDCGTLFSRCEKNCRKDSFITHRAFCDALAEESARLSANQNTNPFVQSLFLLPTQQHTFQNLNPWDPSHQQNPNPNNLHNIKPEAQSQITFQIPNNLSGSVSSSPPPQFLHHSPLFHVRSQPSSNAAATSAHLSATALLQKAATVGAAAITGQQQAMGEFGSVSQLDSVVADHQYVNMGGGLMSSKNDGLTRDFLGLAAANGGAVDVSVNVKDMLTFTGSVGYHQNSLLKSQQQGFGFLGTTTAPESWGNC. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05741 429 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 390 IPR031140 -
Seca8g05741 429 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Seca8g05741 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Seca8g05741 429 Gene3D Classic Zinc Finger 71 171 - -
Seca8g05741 429 MobiDBLite consensus disorder prediction 37 56 - -
Seca8g05741 429 FunFam protein indeterminate-domain 12-like 53 121 - -
Seca8g05741 429 FunFam protein indeterminate-domain 5, chloroplastic-like 128 213 - -
Seca8g05741 429 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Seca8g05741 429 SMART c2h2final6 150 170 IPR013087 -
Seca8g05741 429 SMART c2h2final6 74 96 IPR013087 -
Seca8g05741 429 SMART c2h2final6 115 145 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05741 Seca-Chr8 149702107 149705802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05741 42 422 IDZ Gene Family AT4G02670 51.566 8.51e-120 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g05741 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05741 K25870 - gmx:100780056 573.933