Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05719 ATGGCGAATCATCCTTCTGAGGCCCCCGCCGACGACTTCCTTGAGCAAATCCTGGGCCTACCGAATTTCGCTTCCGCCGATGGAACCGACGCTTCTTCCTTGGCCGCTCCGATGATGCTGCAGCTCAACTCCGGCGACACAGCCACCCACCTTGCCGCCGGAACTGGCTTTCATGCACCGGTCTACCAGTTGGGGCTGAGCTTGGACCAGGGCAAAGGAGGGTTCTTGAAGCCCGACGATGCTTCCGGGAGTGGCAAACGCTTCCGCGAGGATGTTGTTGATACCAGACCTAAGAATGCTTTTCATGGGCAACCCATGCCCACTACCATTCCTACTGCTCCACATCCACCAACAATGCGTCCTAGAGTGCGGGCTAGACGAGGACAGGCTACCGATCCACACAGCATAGCTGAAAGGTTGCGCAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTGGTTCCTAGTGTTAACAAGACAGATAGAGCTGCCATGCTGGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTAATTTGTGA 561 0.533 MANHPSEAPADDFLEQILGLPNFASADGTDASSLAAPMMLQLNSGDTATHLAAGTGFHAPVYQLGLSLDQGKGGFLKPDDASGSGKRFREDVVDTRPKNAFHGQPMPTTIPTAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVNL. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05719 186 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 184 - -
Seca8g05719 186 MobiDBLite consensus disorder prediction 97 133 - -
Seca8g05719 186 Pfam Helix-loop-helix DNA-binding domain 134 178 IPR011598 GO:0046983
Seca8g05719 186 SMART finulus 135 184 IPR011598 GO:0046983
Seca8g05719 186 FunFam Basic helix-loop-helix transcription factor 124 186 - -
Seca8g05719 186 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Seca8g05719 186 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 184 IPR036638 GO:0046983
Seca8g05719 186 Gene3D - 124 185 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05719 Seca-Chr8 149056099 149060030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05719 8 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 63.731 7.19e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g05719 HLH 5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05719 - - gmx:100793177 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05719 8 149056099 149060030 Seca8g05719 8 149056099 149060030 ECH