Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05716 ATGGAGAATTCATTGGGGACCTATGAAACAGAGCTGAATCTCAAGGCAACAGAGTTGAGGTTGGGGTTGCCTGGGAGTGATGAGCCGGAGAAACATTCATGCATTGTTAGAAGCAACAAGAGATCTTCACCAGAAGCCAGTGAGGAAGAGTCCATAAGCAACAGCAACGTGAATACTTTAAATATTGATGACCAAGACAATGTCCCGCCTGCAAAGAAAATATTGGCATGCAGGGCACAAGTAGTAGGATGGCCACCAATTAGATCTTTTAGGAAGAATAGTTTGCAACAGAAGAAGGAGGAACAGGGTGAAGGTGCTGGGATGTACGTGAAAGTGAGCATGGCGGGTGCACCTTATTTGAGGAAGATAGATCTCAAGGTTTACAAGAGCTACCCTGAACTCCTCAAGGCCTTGGAAAAAATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGCTACAATGGATCTGAGTATGCTCCAACTTATGAAGACAAGGACGGTGACTGGATGTTGGTTGGAGACGTTCCATGGCACATGTTTATGTCCTCCTGCAAGAGGCTTAGAATTATGAAAGGATCAGAGGCAAAGGGGTTGGGTTGTTTTTGA 612 0.4477 MENSLGTYETELNLKATELRLGLPGSDEPEKHSCIVRSNKRSSPEASEEESISNSNVNTLNIDDQDNVPPAKKILACRAQVVGWPPIRSFRKNSLQQKKEEQGEGAGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALEKMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWHMFMSSCKRLRIMKGSEAKGLGCF. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05716 203 MobiDBLite consensus disorder prediction 24 47 - -
Seca8g05716 203 ProSiteProfiles PB1 domain profile. 107 194 IPR000270 GO:0005515
Seca8g05716 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 198 IPR003311 GO:0005634|GO:0006355
Seca8g05716 203 MobiDBLite consensus disorder prediction 20 65 - -
Seca8g05716 203 MobiDBLite consensus disorder prediction 48 65 - -
Seca8g05716 203 Pfam AUX/IAA family 17 201 IPR033389 -
Seca8g05716 203 SUPERFAMILY CAD & PB1 domains 103 193 - -
Seca8g05716 203 FunFam Auxin-responsive protein 102 203 - -
Seca8g05716 203 Gene3D - 101 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05716 Seca-Chr8 149028162 149030209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05716 98 200 B3 DNA Binding Superfamily AT2G46530 37.864 6.66e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca8g05716 AUX_IAA 1.5e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05716 K14484 - gmx:100780752 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05716 8 149028162 149030209 Seca8g05716 8 149028162 149030209 ECH