Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05715 ATGGAAGTAATTGGCCTCAAGGAGAAGAAGATGGTGTTTGAGGAAACTGAGCTCAGGCTGGGACTGCCTGGAAATGGATCAGCCAAAGCCACTACTGAAGCACTAGCAGCAAGGAAGAGAGGATTCTCTGAAACTGAGTCTGAGTATGAGAATGAAACAATAACCACTGTGGATTTGAAGCTTAACCTCTCCCCAAAGGAAGCAGCTTCTTCTGCTGCTGTGGCAGATCCACCACCTAAGGACAAGACCCTCCTGCTTTCCGATTCCGCCAAGCCTCCTGCTAAGGCGCAAGTGGTGGGTTGGCCACCGGTTCGGTCGTACCGGAAGAACATGTTTGCAGGCTCAGCAGCCCAAAAGAGCAGCAGCGGATCAGGATCAGGAGATCAGGAGAACAGCCCTAATGGATCGGGAAGTTTTGTGAAAGTGAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACAACAGTTACCCTCAGCTCTCTGATGCATTAGGCAAAATGTTTAGCTCTTTTACCATTGGGAATTGCGAATCCCAAGGCATTAAGGATTTCATGAATGAGAGTAAGTTGATGGATCTGTTGAACAGCTTCGATTATGTCCCAACCTATGAAGACAAGGATGGCGACTGGATGCTTGTCGGTGATGTCCCGTGGGAGATGTTTGTTGAATCTTGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGCACCTAGAGCCATGGAGAAATGCAAGAACAGGAGCTAG 768 0.4844 MEVIGLKEKKMVFEETELRLGLPGNGSAKATTEALAARKRGFSETESEYENETITTVDLKLNLSPKEAASSAAVADPPPKDKTLLLSDSAKPPAKAQVVGWPPVRSYRKNMFAGSAAQKSSSGSGSGDQENSPNGSGSFVKVSMDGAPYLRKVDLKMYNSYPQLSDALGKMFSSFTIGNCESQGIKDFMNESKLMDLLNSFDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05715 255 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 242 IPR003311 GO:0005634|GO:0006355
Seca8g05715 255 Gene3D - 132 249 - -
Seca8g05715 255 Pfam AUX/IAA family 15 246 IPR033389 -
Seca8g05715 255 FunFam Auxin-responsive protein 132 247 - -
Seca8g05715 255 MobiDBLite consensus disorder prediction 66 97 - -
Seca8g05715 255 MobiDBLite consensus disorder prediction 113 138 - -
Seca8g05715 255 ProSiteProfiles PB1 domain profile. 137 237 IPR000270 GO:0005515
Seca8g05715 255 SUPERFAMILY CAD & PB1 domains 129 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05715 Seca-Chr8 148991532 148994390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05715 118 245 B3 DNA Binding Superfamily AT4G23980 30.469 3.92e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca8g05715 AUX_IAA 1.2e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05715 K14484 - gmx:100780214 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05715 8 148991532 148994390 Seca8g05715 8 148991532 148994390 ECH