Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05700 ATGGCCACCACAGAAGAGCCAACTGTCGCGGTTGAACCCGCACCCGAACCTACCATCACCGAGCCACAACCCGAGGAGAAGGAGGAAGCCAAGCCTGAAGAGGCCAAAACCAGGAAAACCAAGGACCCCAAACCTAAGAAGGTTTCCAAACCACGGAACCCTTCTACTCATCCTTCTTATGAAGAGATGATTAAGGATGCAATTGTGACGCTGAAGGAGAAATCGGGTTCGAGCCAATACGCGATTCAAAAATTCACCGAAGAGAAGCACAAGCAGCTTCCTCCAAACTTCAGGAAGCTCTTGCTCTACCATTTGAAGAAGCAAGTTGCTTCTGGAAAGCTCGTCAAGGTTAAAGGTTCCTTTAAACTCTCATCGGCGGCGTCCAAACTGTCCTCGGGAACTGCATCTAAACCGGCTAAGAAGAAGCCTGTGGCTCCCAAGCCCAAGCCCAAGCCCAAAGCCAAGGCTGCACCAGCTAAGGCTTCAAAGACAACCAAGGCTGCAGCGGTGAAGGCCAAGCCAGCTGCAAAGCCCAAGCCTAAAGCTGCGGCGAAGCCCAAGGCTGCTTCTAAGCCTAAAGCTACTGCGGCTAAGCCCAAGCCTGCTGTTGCCAAGCCCAAAGCTGCTGCCAAGCCGAAAACAGCTGTAAAACCTAAGCCCAAACCGGCGAAGGCTGCAAGGACCTCGACGAGGACAACACCAGGGAAGAAAGTTGCCACTTCGAAGCCTGCACCGAAGAAAGCTCCGGCTGCAAAGAAAACTCCGGTAAAGAGCGTGAAGCCGAAGAGTGTAAAATCTCCGGCAAAGAAGGCTACACCAAAGAGAGGGGGAAGAAAGTGA 840 0.5262 MATTEEPTVAVEPAPEPTITEPQPEEKEEAKPEEAKTRKTKDPKPKKVSKPRNPSTHPSYEEMIKDAIVTLKEKSGSSQYAIQKFTEEKHKQLPPNFRKLLLYHLKKQVASGKLVKVKGSFKLSSAASKLSSGTASKPAKKKPVAPKPKPKPKAKAAPAKASKTTKAAAVKAKPAAKPKPKAAAKPKAASKPKATAAKPKPAVAKPKAAAKPKTAVKPKPKPAKAARTSTRTTPGKKVATSKPAPKKAPAAKKTPVKSVKPKSVKSPAKKATPKRGGRK. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05700 279 MobiDBLite consensus disorder prediction 142 156 - -
Seca8g05700 279 MobiDBLite consensus disorder prediction 1 64 - -
Seca8g05700 279 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca8g05700 279 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca8g05700 279 FunFam Histone H1 51 136 - -
Seca8g05700 279 PANTHER HISTONE H1 28 262 - -
Seca8g05700 279 CDD H15 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca8g05700 279 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca8g05700 279 PRINTS Histone H5 signature 153 167 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca8g05700 279 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca8g05700 279 PRINTS Histone H5 signature 188 205 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca8g05700 279 PRINTS Histone H5 signature 210 229 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca8g05700 279 MobiDBLite consensus disorder prediction 21 41 - -
Seca8g05700 279 MobiDBLite consensus disorder prediction 124 279 - -
Seca8g05700 279 MobiDBLite consensus disorder prediction 263 279 - -
Seca8g05700 279 Gene3D - 52 132 IPR036388 -
Seca8g05700 279 SUPERFAMILY "Winged helix" DNA-binding domain 51 127 IPR036390 -
Seca8g05700 279 Pfam linker histone H1 and H5 family 57 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05700 Seca-Chr8 148781195 148782983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05700 58 123 Single Myb Histone (SMH) Gene Family AT1G72740 34.848 2.03e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05700 K11275 - gmx:100795994 144.436