Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05699 ATGACTGACATATTTGAAAAGCAATCATCTCCTGAAGCTTCAAATTATGCATCAAGCAGTGGCATGTCTGGGGATGATAAGGAAATTGGTTATAGAGATGCAACATCAAAGCATAGATATCTTCTGGTCAACAACTCTCTTCTTCACTTGTTATCCATCAAAATTGACCTGAATTTCGCTCGCATGGTGATGGCAGAGGTGGTGGGTACTTTTATCTTGATGTTCTGTGTATGTGGAATAATTGCAAGCACACAATTCCAAAATGGTGCAGTGGGCCTTCTGGAGTATGCAGCTACAGCAGGATTAACAGTGATTGTGATAATTTTCTCTATAGGGCCAATATCTTGTGCCCATGTTAACCCAGCTGTCACAATAGCCTTTGCAACAATCGGTCAATTCCCATGGTTCAAGGTTCCAATTTACATAATAGCACAGACAATAGGTTCTATGTCGGCAACATATATCGGTAGCCTTGTCTATGGCATAAAATCAGATGTTATGATGACTCGGCCACTCCAAGGGTGTAACTCTGCCTTCTGGGTGGAGTTTATTGCAACTTTCATCATCATGTTTCTGATTGCAGCTTTGACATCTGAGCCTCAATCAGTGGGCCATTTATCTGGCTTTGTTGCTGGAATTGCAATTGGGCTTGCTGTACTAATCACAGGCCCTGTCTCAGGTGGATCAATGAATCCTGCAAGATCATTAGGTCCAGCAATTCTGTCATTGAAATTTAAGGACATGTGGATATACATCCTAGCCCCCAGTGCTGGAGCTGTGGCAGGAGCTCTAATGTTTCGTTTCCTACGTCTTCGAGACCAACATTGTAACAACACTATGTCCTCCCCAGACATCAGTGATGTTGTTCGTCCCATACCCTTTTGTGCAAAGTATAATGGCAAGCCGAGCTTCACACAGATCGTGGTGGCCTCCTCTATCGGGTTGATATTTGCTGCAGCAATGCATTATCGCTTGGTAAAAATGAGAGATCGAAAGATCATCCCACGTTTGAGATTATCTAAAGCAGGCCAAACGCCAAAGCTTGAGAGGTTCTCTCATTACGTAGCTAGGCAAATGGGGTTCAAAGATAGGAGGAATTGTCCACATCTATGTAAATTGGCTTCTGAATACATACGCAAATCTGACGGATGTGAAGATGATATCTACGCCTTCTTCGAGAATGAACCCAATGCTGATTCACTTTTTGTGAAGCTTGTGGAGGAGTTTGAGAGATGCATTCTTAGTTACTTTGCATTCCATTGGAGCTATTGTGACGTATTGATAAGTCAGGTATTGAGCTCTGACACTGAGCCAAAAAGAAAGCTCAAGCACCTAGTTATGGCGGCCACTAGAGAACAAAGGGTGGAGAGGGTAACCAAGAATCTGAAAGTGGCTAGAGTTTTTAATACATTAGTAGAAGAGATGAAAGCAATGGGACTTGTAACAACTGATGACAATCGATGCACAGAGGTGATGGCTCCAGTAGCTCACAGTGATAGGAGCCCAGTGCTCCTTTTCATGGGCGGTGGTATGGGAGCTGGCAAGAGCACTGTGCTTAAGGATATTCTCAAAGAACCTTTCTGGGCAGGAGCAGCAAGCAATGCTGTTATCATTGAGGCAGATGCCTTCAAAGAATCAGATGTTATCTATAAGGCCCTTAGTTCAAGAGGGCATCATGACATGATTCGAACAGCTGAACTGGTACACCAATCATCCACAGATGCAGCCTCATCCCTCCTGGTAACAGCACTAAATGAGGGGCGGGATGTAATTATGGATGGCACATTCTCCTGGTTGCCATTTGTTGTGCAGACAATAACAATGGCCAGAAATGTCCACCGCCGCCGTTACCGAATGGGAGCTGGCTACAAGGTGAATGAGGATGGAAGTGTTACTGAAAACTACTGGGAACGAATTGAACATGAAGAACCTGAAAAGGTTGGAGGCAAAAAGAGAAAACCATATAGGATAGAGCTGGTTGGAGTTGTATGTGATGCTTACCTTGCAGTCATTAGAGGCATAAGGAGAGCTATCATGTGTAGAAGAGCAGTAAGAGTAAAGTCACAATTGAAATCCCATAAGAGATTTGCAGATGCATTCTTGACTTACTGTCAGCTAGTAGACAATGCTCGGCTATACAGTACAAATGCTTTGGAAGGTTCACCCAAGATAACTGTTGTGAAGTTGATAGGATGGAAAGACAGAGACAAGACACTGCTTGTTGATCCAGATGAAATCGATTGTTTGAATAGGGTTGCTAGGTTGAATGAAGATGCGGACTCCATATACGAACTTTACAAGCACCCCAACCCAACTTGTGAATCTGGATCTATATGGAAAGACATTGTATTATCTCCCTCAAGGTTGAACATCCAACAGGAGTTGAAGTATTCAATCCAAAAGGTTGAGAGATATTCAATCCAAAATGCTAATTTAGCGGGGCAGTGA 2448 0.4322 MTDIFEKQSSPEASNYASSSGMSGDDKEIGYRDATSKHRYLLVNNSLLHLLSIKIDLNFARMVMAEVVGTFILMFCVCGIIASTQFQNGAVGLLEYAATAGLTVIVIIFSIGPISCAHVNPAVTIAFATIGQFPWFKVPIYIIAQTIGSMSATYIGSLVYGIKSDVMMTRPLQGCNSAFWVEFIATFIIMFLIAALTSEPQSVGHLSGFVAGIAIGLAVLITGPVSGGSMNPARSLGPAILSLKFKDMWIYILAPSAGAVAGALMFRFLRLRDQHCNNTMSSPDISDVVRPIPFCAKYNGKPSFTQIVVASSIGLIFAAAMHYRLVKMRDRKIIPRLRLSKAGQTPKLERFSHYVARQMGFKDRRNCPHLCKLASEYIRKSDGCEDDIYAFFENEPNADSLFVKLVEEFERCILSYFAFHWSYCDVLISQVLSSDTEPKRKLKHLVMAATREQRVERVTKNLKVARVFNTLVEEMKAMGLVTTDDNRCTEVMAPVAHSDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAASNAVIIEADAFKESDVIYKALSSRGHHDMIRTAELVHQSSTDAASSLLVTALNEGRDVIMDGTFSWLPFVVQTITMARNVHRRRYRMGAGYKVNEDGSVTENYWERIEHEEPEKVGGKKRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVKSQLKSHKRFADAFLTYCQLVDNARLYSTNALEGSPKITVVKLIGWKDRDKTLLVDPDEIDCLNRVARLNEDADSIYELYKHPNPTCESGSIWKDIVLSPSRLNIQQELKYSIQKVERYSIQNANLAGQ. 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05699 815 Gene3D - 485 721 IPR027417 -
Seca8g05699 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 632 IPR027417 -
Seca8g05699 815 CDD MIP 61 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05699 815 PANTHER UNCHARACTERIZED 296 810 IPR044802 -
Seca8g05699 815 Pfam Zeta toxin 496 607 IPR010488 GO:0005524|GO:0016301
Seca8g05699 815 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g05699 815 Pfam Major intrinsic protein 58 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05699 815 Gene3D Glycerol uptake facilitator protein. 34 282 IPR023271 -
Seca8g05699 815 SUPERFAMILY Aquaporin-like 57 277 IPR023271 -
Seca8g05699 815 MobiDBLite consensus disorder prediction 1 25 - -
Seca8g05699 815 ProSitePatterns MIP family signature. 118 126 IPR022357 -
Seca8g05699 815 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05699 815 PRINTS Major intrinsic protein family signature 61 80 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05699 815 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05699 815 PRINTS Major intrinsic protein family signature 137 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05699 815 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05699 815 PRINTS Major intrinsic protein family signature 100 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05699 Seca-Chr8 148769531 148780254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05699 56 292 Major Intrinsic Protein MIP AT4G10380 39.662 5.51e-49 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05699 - - aip:107634095 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05699 8 148769531 148780254 Seca8g05699 8 148769531 148780254 ECH
Seca8g05699 8 148769531 148780254 Seca2g04336 2 128172015 128176661 PCT