Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05682 ATGGGCATCCCAGAAAACATTGTTGTTGGTTCTCACGTTTGGGTTGGAGATCCAGAGTTAGTTTGGGTTGATGGACTTGTACTGAATATTAATGGAGAAGGAGCTGAAATTGAAACAAGCAATGAGAAGAAGGTTGTTTCCCATTTGTCAAAATTACATCCCAAGGATACAGAAGCTCCTGCTGACGGAGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGGAGTGCTGAATAATTTGGAAACTAGATACAAGATCAATGAAATCTATACTTATACTGGAAATATTCTTATTGCAATCAATCCCTTCCAAAGTCTTCCACACCTGTATGATGCTAATGTGATGAAAAGATACAAAGGAGCCACAATTGGAGATTTAAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGCAATGATTACTGAGGAGAAAAGCAACTCTATTCTGGTTAGCGGTGAGAGTGGTGCTGGTAAGACAGAGACCACCAAAATGCTTATGCGTTACCTAGCATATTTGGGTGGTAACACTGCATCTGAAGGACGAACTGTTGAACAACAAGTTCTAGAATCAAACCCAGTTCTTGAAGCATTTGGTAACGCAAAAACAGTTAGAAATGACAATTCTAGCCGATTCGGAAAATTTGTTGAGATTCAATTTGATAAGTTTGGACGAATATCTGGTGCAGCCATTAGAACTTATCTCCTTGAGAAATCTCGTGTTTGCCAAATCTCCGATCCTGAGCGTAACTATCACTGTTTTTACCTTCTCTGTGCTTCTCCTCCTGAGGAAAAGGAGAAATATAAACTGGGAGATCCCAGATCATTTCACTATCTTAATCAATCCAGTTGCTATGAATTAGTTGGTGTTAATGCTGCTCAAGAGTATCTTAGCACAAAGAGAGCCATGGATATTGTGGGAATCAGCCAGGAGGAGCAAGATGCAATATTCAGAGTTGTAGCTGCTATTCTTCATCTTGGAAACATTAAATTTGCAAAATCAGAAGAAACTGATTCGTCAGTTCTAGAAGATGAAGAATCCAAGTTTCATCTCCAAACAGCAGCAGAACTTCTCATGTGTGATCCTGATGCTTTGGAAGTTGCTCTTTGTAAGCGCGTGATGATCACCCCAGAAGAAATCATCAAAAGAAGTCTTGATCCTCTTGGTGCAACAGTTAGCAGGGATGGTTTAGCAAAAACATTATATTCTCGTTTATTTGATTGGTTAGTTGATAAAATCAATAAATCCATTGGGCAGGATCCTAACTCAAAATGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAACTAATAGTTTTGAGCAATTCTGTATTAATTTCACAAATGAAAAGCTTCAGCAACACTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATACACAAAAGAAGGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTCATTGAAAAGAAACCAGGTGGAATAATTGCTCTGCTTGATGAAGCTTGTATGTTTCCAAAGTCAACTCATGAAACATTTTCCCAAAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATCAAGCCAAAATTGGCACGCTCTGACTTCACTATTGTTCATTATGCAGGAGAGGTTCAATATCAGTCTGAGCAGTTTATAGACAAAAATAAAGACTATGTTGTTCCTGAACATCAAGAAATGCTAAGTGCTTCCAAATGTTCGTTTGTATCAGGCCTTTTTCCTCCGCTTTCTGAGGAGACAGCCAAATCTGCTAAGTTTTCTTCTATTGGTTCTCGTTTTAAGCTACAATTGCAACAATTGATGGAAACGCTCAATCATACAGAGCCCCACTATATTCGATGTGTGAAGCCAAATAGTCTATTAAAACCTGGCATATTTGAGAATATGAATGTCATCCAACAATTACGTTCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTCCCCACTCACAGGAACTTTCATGAGTTTTTGACTCGAGTACGCGTTCTTGCACCAGAAGTTCTTCGAGGGAACTTTGAAGAGAAGGATTCATGTAAAAAGATTTTGGAGAAGATTGGGCTGACAGGTTATCAGATAGGGGAAACTAAAATATTCCTAAGAGCTGGTCAGATGGCTGAATTGGATGCTCGTAGAGCATGCCTGCTTAGCAATTCTGCAACAGTTATTCAAAAGCAGATTAAAACTCATATTAGTCGGAAAACATATAATGCATTGCGGCAGTCCTCTATCTTTGTGCAATCCTTTTGCAGAGGAGGACTGGCTCGGAGATCATATTATCACATGAAGAGGGAAGCAGCTGCAACCAGAATTCAAACATATATGCGTGGAAAATTAGCCAGAAAATGGTACACTGAAATAAGGATTTCTGCCATTGTCTTGCAGACAGGTTTTCGTACAATGGCTGTTCATGATCAATTTAGATATAGAAAGAAAACTGTTGCATCTACTAGGATTCAGTCCTATTGGCGCCGACATAAAGCTCTCTCTGACTATCAAAATCTTAAGAAAGCATCAATGATTTCACAAAGTGTCAATCACTCCAGAGATATACATGAACAGAAGGTTTTGGAGATATCAGCAGAAAATGAAAGTCCTTCCGTGGAAGAGTCTTCAAATTCCTTTCAACAAGAATCCTCAAGTCCTTTCCAAGATAATGAAAGCGTTGAAGCTATCAAGGATTCCTCAAGTCCTCTAAGAGACACTGAAAATGTTGAGGCTCTTACTGCGGAAATAAAAAACTTGAAGGTCATGTTGCAAGAAGAAAAACAAAAAGCTGATGAATATGAAAGGAAGTATATAGAAGCTCAAGGATCTAGTGAAGAGTTACGCAAAAAGTTAGCAGAAACTGAAAAAAGAGTATATCAGCTTCAGGACTCATTGAACAGTGTGTATCAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTAAAGATGATCTTAAGTACTTCATCAAGATTGAGTTCAACATTTCGACCAATTGCTAG 3048 0.3868 MGIPENIVVGSHVWVGDPELVWVDGLVLNINGEGAEIETSNEKKVVSHLSKLHPKDTEAPADGVDDMTKLAYLHEPGVLNNLETRYKINEIYTYTGNILIAINPFQSLPHLYDANVMKRYKGATIGDLSPHVFAIAEAAYRAMITEEKSNSILVSGESGAGKTETTKMLMRYLAYLGGNTASEGRTVEQQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKFGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSSCYELVGVNAAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIKFAKSEETDSSVLEDEESKFHLQTAAELLMCDPDALEVALCKRVMITPEEIIKRSLDPLGATVSRDGLAKTLYSRLFDWLVDKINKSIGQDPNSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKDHKRFIKPKLARSDFTIVHYAGEVQYQSEQFIDKNKDYVVPEHQEMLSASKCSFVSGLFPPLSEETAKSAKFSSIGSRFKLQLQQLMETLNHTEPHYIRCVKPNSLLKPGIFENMNVIQQLRSGGVLEAVRIKCAGFPTHRNFHEFLTRVRVLAPEVLRGNFEEKDSCKKILEKIGLTGYQIGETKIFLRAGQMAELDARRACLLSNSATVIQKQIKTHISRKTYNALRQSSIFVQSFCRGGLARRSYYHMKREAAATRIQTYMRGKLARKWYTEIRISAIVLQTGFRTMAVHDQFRYRKKTVASTRIQSYWRRHKALSDYQNLKKASMISQSVNHSRDIHEQKVLEISAENESPSVEESSNSFQQESSSPFQDNESVEAIKDSSSPLRDTENVEALTAEIKNLKVMLQEEKQKADEYERKYIEAQGSSEELRKKLAETEKRVYQLQDSLNSVYQDDIFHVKSSCRAKDDLKYFIKIEFNISTNC. 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05682 1015 SMART iq_5 782 804 IPR000048 GO:0005515
Seca8g05682 1015 SMART iq_5 830 852 IPR000048 GO:0005515
Seca8g05682 1015 SMART iq_5 734 756 IPR000048 GO:0005515
Seca8g05682 1015 SMART iq_5 757 779 IPR000048 GO:0005515
Seca8g05682 1015 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05682 1015 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05682 1015 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05682 1015 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05682 1015 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05682 1015 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca8g05682 1015 CDD MYSc_Myo11 76 720 IPR036018 -
Seca8g05682 1015 Gene3D - 252 310 - -
Seca8g05682 1015 ProSiteProfiles IQ motif profile. 735 762 IPR000048 GO:0005515
Seca8g05682 1015 MobiDBLite consensus disorder prediction 881 912 - -
Seca8g05682 1015 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05682 1015 Pfam IQ calmodulin-binding motif 834 851 IPR000048 GO:0005515
Seca8g05682 1015 Pfam IQ calmodulin-binding motif 760 778 IPR000048 GO:0005515
Seca8g05682 1015 Pfam IQ calmodulin-binding motif 785 803 IPR000048 GO:0005515
Seca8g05682 1015 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Seca8g05682 1015 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Seca8g05682 1015 FunFam Myosin 2 312 425 - -
Seca8g05682 1015 Gene3D - 439 623 - -
Seca8g05682 1015 MobiDBLite consensus disorder prediction 881 919 - -
Seca8g05682 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 858 IPR027417 -
Seca8g05682 1015 Gene3D - 666 733 - -
Seca8g05682 1015 Gene3D - 735 784 - -
Seca8g05682 1015 Gene3D - 785 835 - -
Seca8g05682 1015 Coils Coil 924 979 - -
Seca8g05682 1015 Gene3D Kinesin motor domain 65 662 IPR036961 -
Seca8g05682 1015 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05682 1015 ProSiteProfiles IQ motif profile. 831 859 IPR000048 GO:0005515
Seca8g05682 1015 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05682 1015 FunFam Myosin heavy chain 252 307 - -
Seca8g05682 1015 FunFam Class V myosin 439 583 - -
Seca8g05682 1015 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Seca8g05682 1015 PANTHER MYOSIN 54 979 - -
Seca8g05682 1015 ProSiteProfiles IQ motif profile. 783 807 IPR000048 GO:0005515
Seca8g05682 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 785 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05682 Seca-Chr8 148559353 148583980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05682 1 983 Myosins gene family AT1G54560 64.217 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05682 K10357 - gmx:100803485 1722.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05682 8 148559353 148583980 Seca8g05682 8 148559353 148583980 ECH