Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05681 ATGGAAGGAAACTATCTGAACAGAAACACTCATAGAGAGGATAGCTTGGGGTTTGAGGAGCATCCATGGGGAACTTCATGGCCAGCAAGGAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAGATCAGCTCAAGCTTTGGGTGGACACATGAATGTTCATAGGAGGGATAGGGCAAGATTAAGATCATCTTTATCTTCATGGGTCTCTGAGTGCCCTAAACCTAACCCTATAACCACTAACCCTTACCCAACTCTTCTTTCATCTCCATCTGATGAGGTTTTGAATTATGCACATCATCCTTCTCCACTTTATAGTCCTTGTCTTTCTCTATCTTCTTCACCCTCCCCAGCTTCTACAAGTGAAGATAAGAAACCAAGACTAATCACATCTTCTCACTTTCCTCTTTTGAGTCCTCAAAGCAGGGAAATCATGATGATGAGTAGTAAGAACACAAGGAGAAATGCTGAGGAGGAGGAGGAGCACAAGGTTTTCAAGAATAATGAGCAAAACATTACGTTGGAGTTAGGAATAGGGTTGCTTAAACACCAAGAGGAGAAGTTAGATTTGGAGCTTCGACTTGGACATTTCTAG 594 0.4226 MEGNYLNRNTHREDSLGFEEHPWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPITTNPYPTLLSSPSDEVLNYAHHPSPLYSPCLSLSSSPSPASTSEDKKPRLITSSHFPLLSPQSREIMMMSSKNTRRNAEEEEEHKVFKNNEQNITLELGIGLLKHQEEKLDLELRLGHF. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05681 197 Pfam C2H2-type zinc finger 32 56 - -
Seca8g05681 197 PANTHER OS07G0101800 PROTEIN 12 196 - -
Seca8g05681 197 Gene3D Classic Zinc Finger 19 73 - -
Seca8g05681 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Seca8g05681 197 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Seca8g05681 197 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Seca8g05681 197 SMART c2h2final6 32 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05681 Seca-Chr8 148551432 148552745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05681 3 195 C2H2 Transcription Factor Family AT3G23130 41.538 6.48e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g05681 zf-C2H2_6 5.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05681 - - gmx:102660985 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05681 8 148551432 148552745 Seca2g04350 2 128337021 128338368 PCT