Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05680 ATGGAAGAATTCAGCTGCAGCTACCAAGAAGACTCCAACTCCAAGAGCTCAAGCACTGAAGAAATTGATCGATCTGATCATGACATGGGAATTGGCAGATCCTATGAGTGTGTGTTTTGCAAGAGAGGCTTCACTACTGCACAAGCCTTAGGTGGACACATGAACATTCACAGAAAAGATAGAGCTGCAAACAAGACCAAGCCCAATATTTTCCCTCCTTCAAGTTCAATTACCAAGCTTGATGACACAAACTATGCAGATCTTGGCTTCTATTCAGCAATTCCAAGAGGGAATAATTACTACAATACTACAACTGTTCCTGATCATCGTGAGGTGGATCATGCTATTAATTACCATCAGATATATTTTCCTGCTGCTTCACATCATGAGGTGTTGTGTGTGGAAAACCAAAGGGATCGTAGACAAGATTGGAGGCAGAGGGGTTTGAACTTGTACACTAATCCATTGTGTGTACATGAAAATAATAAAGACAAGGTGGAAAACAACAGTGAAGAGGATGACCTGGATTTGGAGCTTAGACTTGGTCATCATCCATAG 558 0.414 MEEFSCSYQEDSNSKSSSTEEIDRSDHDMGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRAANKTKPNIFPPSSSITKLDDTNYADLGFYSAIPRGNNYYNTTTVPDHREVDHAINYHQIYFPAASHHEVLCVENQRDRRQDWRQRGLNLYTNPLCVHENNKDKVENNSEEDDLDLELRLGHHP. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05680 185 Pfam C2H2-type zinc finger 35 59 - -
Seca8g05680 185 Gene3D Classic Zinc Finger 12 84 - -
Seca8g05680 185 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Seca8g05680 185 MobiDBLite consensus disorder prediction 1 27 - -
Seca8g05680 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Seca8g05680 185 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Seca8g05680 185 PANTHER OS07G0101800 PROTEIN 1 184 - -
Seca8g05680 185 MobiDBLite consensus disorder prediction 162 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05680 Seca-Chr8 148525913 148526470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05680 33 185 C2H2 Transcription Factor Family AT4G17810 30.769 1.88e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g05680 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05680 - - gmx:102670484 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05680 8 148525913 148526470 Seca8g05680 8 148525913 148526470 ECH
Seca8g05680 8 148525913 148526470 Seca2g04351 2 128352443 128352979 PCT