Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05679 ATGAATTCTAGAAGAGACAACCGCAACAACAGAGTTGCTCTGTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCTTCTCTTTACTCCTCAACTTCTTCCCATGAAATAAGTGAACATGATAATGATGAAGCAATGGATGGATTACAAGATAGAGTCAATCTGCTGAAAAGATTGTCAGGTGATATACATGAGGAGGTGGATAGTCATAACCGCATGCTGGATAGAATGGGCAATGATATGGATTCTTCAAGAGGAACCCTCTCAGGCACTATGGACAAATTCAAAATGGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTTGTGATTTTTCTTATAATATACTATCTGACTAGGTAA 381 0.3885 MNSRRDNRNNRVALFDGIEEGGIRASSLYSSTSSHEISEHDNDEAMDGLQDRVNLLKRLSGDIHEEVDSHNRMLDRMGNDMDSSRGTLSGTMDKFKMVFETKSSRRMFSLVASFVVIFLIIYYLTR. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05679 126 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 36 98 IPR000727 -
Seca8g05679 126 FunFam bet1-like SNARE 1-1 43 107 - -
Seca8g05679 126 Gene3D - 43 107 - -
Seca8g05679 126 SMART tSNARE_6 31 98 IPR000727 -
Seca8g05679 126 PANTHER GOLGI SNARE BET1-RELATED 8 125 - -
Seca8g05679 126 CDD SNARE_Bet1 39 96 IPR039899 -
Seca8g05679 126 SUPERFAMILY SNARE fusion complex 32 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05679 Seca-Chr8 148516999 148520207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05679 42 125 SNARE and Associated Proteins AT1G28490 25.000 9.35e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05679 K08504 - gmx:100500329 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05679 8 148516999 148520207 Seca8g05679 8 148516999 148520207 ECH
Seca8g05679 8 148516999 148520207 Seca8g04342 8 123907644 123908787 PCT