Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05677 ATGGCTTCTGCAAGTGGAAATGGCACTGGCACTGGCACAGGCTCTGGCTCTGGATCTCCTTGTGGGGCCTGCAAGTTCCTTAGACGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCTGAACAAGGACCTGCTAGATTTGCAGCCATCCACAAGGTGTTTGGTGCTAGCAATGTTTCCAAGTTGCTGTTGCTTATTCCAGCTCATGATCGTTGTGAGGCTGTGGTCACAATTGCTTATGAAGCCCAAGCTCGTATCAGAGACCCTGTTTATGGTTGTGTCTCCCATATTTTTTCCTTACAACAGCAGGTAGTAGCATGCTTGCAGGCACAACTGATGCAAGTGAAGGCACAGCTGGCTCAGAACATGATGGAGTCAAGGAACTTGGAGAATCAGCAGTGGTCAGGGAATGTTGCTGGACAACCACCATTCAATAATCCACTTTGTCCCACTAATTACATGAACCCTATATCTCCTCAGAGCTCACTTGATTCAATTGATTATAGCAGCATCCATGATGGAATCAACATGCAAGATTTACAGAGCAGAGAGGATTTCTCATTCCAAGCTTGTTCTAAGAAAAGATCATATAATAATAATGATGATTTGGGTGAGCTGCAAGAACTGGCACTCAGGATGATGAGGAACTATAACTAG 666 0.4505 MASASGNGTGTGTGSGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLLIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFSLQQQVVACLQAQLMQVKAQLAQNMMESRNLENQQWSGNVAGQPPFNNPLCPTNYMNPISPQSSLDSIDYSSIHDGINMQDLQSREDFSFQACSKKRSYNNNDDLGELQELALRMMRNYN. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05677 221 MobiDBLite consensus disorder prediction 1 18 - -
Seca8g05677 221 Coils Coil 115 135 - -
Seca8g05677 221 MobiDBLite consensus disorder prediction 1 20 - -
Seca8g05677 221 ProSiteProfiles LOB domain profile. 19 122 IPR004883 -
Seca8g05677 221 PANTHER LOB DOMAIN CONTAINING PROTEIN 16 177 - -
Seca8g05677 221 Pfam Lateral organ boundaries (LOB) domain 20 118 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05677 Seca-Chr8 148492650 148494277 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05677 9 219 AS2 family AT2G42430 53.785 1.03e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca8g05677 LOB 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05677 K13944 - gmx:100801508 331.257