Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05676 ATGACTGGTTCTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGGAAATGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAGCAAGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTCCCTGTTAGTGACCGTTGTGAAGCTGCTGTCACAATCTCATATGAAGCTCAAGCTAGACTTCAAGATCCTATTTATGGCTGTGTTTCCCATATTTTTGCTCTTCAACAACAGGTTGTGGTTAATTTACAAGCACAGCTAGCTTATCTCAAAGAACAAGCAGCTCAGACTTGTTTCAATGCCTCTACCAATGAAAACTCTAATGAAAATTACTTTGACAAATCTACTACTGCTTTCACCCAAGATCTTCAGAGTTGGTTCCAGGGGGAAAATTCCAACCTGGGGCCAGAGTTTCTTCCTAACTTGTCTAATAATAATTCCTCAGCAACACAATATTATGGGAACAATAATACTCTCATGGATCTAAATCCTGTTGGGAATTATGGAAATTCAGGAGGAGGAGTCATGGAAGAAAGCAGCTCATTTTCTAGTTTTGATGAGAGTTCTAATTCCATGTCCTATGACATGCAAACAAACAGGAGAACATGGGGATTTGATGAAGTGGAAGACCTACATTCAGTGGCTTTTGGATACAGTTGA 711 0.4107 MTGSGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVVNLQAQLAYLKEQAAQTCFNASTNENSNENYFDKSTTAFTQDLQSWFQGENSNLGPEFLPNLSNNNSSATQYYGNNNTLMDLNPVGNYGNSGGGVMEESSSFSSFDESSNSMSYDMQTNRRTWGFDEVEDLHSVAFGYS. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05676 236 PANTHER LOB DOMAIN CONTAINING PROTEIN 5 210 - -
Seca8g05676 236 ProSiteProfiles LOB domain profile. 8 111 IPR004883 -
Seca8g05676 236 Pfam Lateral organ boundaries (LOB) domain 9 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05676 Seca-Chr8 148480003 148481353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05676 9 235 AS2 family AT3G58190 52.174 9.61e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca8g05676 LOB 2.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05676 K13945 - gmx:100776678 348.977