Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05661 ATGAGAAAATCCTCAAAGGCATCTTCTTCCTCTCCATCATCCAAATCCGAGAAGAAGCCCCATCTTCGAAGCTCCAAAGCCCAATGGCCAGAGACCCCAGAGAAGCTACCACAGCGCTCGCGCAACCGCGGCGTCGCGCTCTCCGTTGCGGAGATTAGGAAAGTTGCCGAGGGTTTGCAGGATCCGAAGCAACGCCGTGAAACGACGTCGTCGCAAGCCAAAACGGCAAGGAGGCAGATCGCATTGCCTTCCCCATGTAAACCCAAGACTGTTACTGATGAACCCTCCAAGCTTCCAGAAAAGTATGAAATTTTGGGCGAGTTCTTCGACAGCTTGGATAGTTCGATTCGATTATTGCGTTTGAAAGGGTCGATGCCATCTTTCACAAATATCAGTCCCAAGATTGAATGTTTAACTGATAGGAGGTTTACACATGGTCATCTGGCCCAGTTGAAATTCATCTTACCTGATGCAATTGAAATTAAGAAGTTACTTGTGTTTGACGAACGGACAAGTTGTATGAAGCCAGATCTTCATGTTACTATAAACCTTGATGCAGTAGAGTCTGATGCAAAGTTGCTCCCTGAACGTGGGACTGGGTCGCTGAGGAAGTTATTTCGCACACGGCTTAGAGATTTTTGTAAATCTCATCCTGAGGGTGATGAAATTCCAGAGGAAATACTGCCTGAGCCATTCAATCGCCCAAAGCAAGACCGTTTATTGAACTTATTGAAAACTCCCTCATCATTATCTAAGGAGGCATTATCAGATGCATCTGTGACACATTCTCCCGCACCTTTATCAGCATGCTTGCAGAATAATGACATTGCAGATAATACAGATTCGGCTAGCATAGAAAAGAACTTGTCAGATAATACAGATTCTGCTAACCAGCAACTAGCAGTAGCCTCTCATATGTCTAAAGCTTTTACAAGGCGGTTTTCTCAGAAATCTAAGGAAAATGGAGCAGATAATGCACAGCATAAATGTCAATCAGATTCTTTCCAACCGTTGGCTTTTCCAGTTTCAGAGTCAAGCCTGAAGGAAAATTGCTCTTATGAGAGCACTGAATCAAAACCCAAAGCATGCTCATCTGAGATAGCTTCAGAAGCAGCCAGTAGTGGTTTATGCCCAACAGTTTGTGCTTCTTCAAATTGCTTCACATCATCCAGTGCTCCACCTGCTACTCCAAGCAAAACCATTGAGTATACAGAAAACAAAGATGGGTCTCTCAAAAGCATCAATGCCACATCAACTCCGGCTAAACTTGTGTGTACTCCATCCAGACTGATGTCTGCCACTCCTGCATTGCCTGCACCTAAAAGAGCTTGCATGAGTCCTGATGACAACGCTACCAGTTCACTGAACAAGTTGGTTAGACGTCCACCTCGTACAAGATCATTGAAATTTGACACTCCAGTGAAAAATGAAGATGTTGTCGGTAGCTTGTCAATTGATGATGATATTTTTGATATCCTGCCAGAGAATCTACTCCAATCGATTATGGAAAAAGAAAGAATAGCAAAGGAGGAAAGTGATCCAGCTATCTCACAAGCAAAGAGACGGCAAAAAAATATCGCCAGCCTCCCTAAGCTCTTTAACATGATTAACCTGTTGTTTCATTCAAAAAACCGTTCTGTTATCACGAAAGAGGAGCTTATAAGCAAGATAATCTCAAGCAATTGTGATATTGTTGACAGAAGTGAAGTTGAAGAACAGCTGCATTTGTTGCTAGAACTAGTACCGGATTGGATTTCTGAGAAGTTAGCCTCTAGTGGGGATTTCCTATTCTGCATAAATAAAATGTTGAACCCTGAAACCGTACGAGCATCACTTGAAGAAGCAAAATGA 1851 0.4311 MRKSSKASSSSPSSKSEKKPHLRSSKAQWPETPEKLPQRSRNRGVALSVAEIRKVAEGLQDPKQRRETTSSQAKTARRQIALPSPCKPKTVTDEPSKLPEKYEILGEFFDSLDSSIRLLRLKGSMPSFTNISPKIECLTDRRFTHGHLAQLKFILPDAIEIKKLLVFDERTSCMKPDLHVTINLDAVESDAKLLPERGTGSLRKLFRTRLRDFCKSHPEGDEIPEEILPEPFNRPKQDRLLNLLKTPSSLSKEALSDASVTHSPAPLSACLQNNDIADNTDSASIEKNLSDNTDSANQQLAVASHMSKAFTRRFSQKSKENGADNAQHKCQSDSFQPLAFPVSESSLKENCSYESTESKPKACSSEIASEAASSGLCPTVCASSNCFTSSSAPPATPSKTIEYTENKDGSLKSINATSTPAKLVCTPSRLMSATPALPAPKRACMSPDDNATSSLNKLVRRPPRTRSLKFDTPVKNEDVVGSLSIDDDIFDILPENLLQSIMEKERIAKEESDPAISQAKRRQKNIASLPKLFNMINLLFHSKNRSVITKEELISKIISSNCDIVDRSEVEEQLHLLLELVPDWISEKLASSGDFLFCINKMLNPETVRASLEEAK. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05661 616 CDD Cdt1_c 492 613 IPR032054 -
Seca8g05661 616 MobiDBLite consensus disorder prediction 1 15 - -
Seca8g05661 616 MobiDBLite consensus disorder prediction 1 95 - -
Seca8g05661 616 FunFam CDT1-like protein a chloroplastic 486 616 - -
Seca8g05661 616 Gene3D - 487 616 IPR038090 -
Seca8g05661 616 SUPERFAMILY "Winged helix" DNA-binding domain 95 232 IPR036390 -
Seca8g05661 616 PANTHER DNA REPLICATION FACTOR CDT1 4 616 IPR045173 GO:0003677|GO:0030174|GO:0071163
Seca8g05661 616 SMART CDT1_2 98 230 IPR014939 -
Seca8g05661 616 Pfam DNA replication factor CDT1 like 98 188 IPR014939 -
Seca8g05661 616 CDD Cdt1_m 97 236 IPR014939 -
Seca8g05661 616 MobiDBLite consensus disorder prediction 56 72 - -
Seca8g05661 616 Pfam DNA replication factor Cdt1 C-terminal domain 496 588 IPR032054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05661 Seca-Chr8 148333053 148336921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05661 417 614 Core DNA Replication Machinery Family AT2G31270 50.467 3.17e-48 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05661 K10727 - gmx:100778818 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05661 8 148333053 148336921 Seca8g05661 8 148333053 148336921 ECH