Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05655 ATGGCACTGAACAAGAACCATTCCTACAAGCTTGGATATCAAGCTCTCCCACCCATCATAACCCAGCCTAGTACTACACTCCATCACCCTCCACAACCTGTTTCAGGCTATGCTTTTCCCATATTTGCCATTGTTGTTGTCAGCATCTTAGCCACCGTTTTGTTGCTCCTCAGCTACTTCACTTTTTTGACCAAATGCTGCTCAAACTGGCAACAATTTAATCCTCTGAGATGGATTTCCATCCTGAGAGCTCGACAGAATGAGGATCTCTTCATAGCATTGTCCCCTGCCATGTGGAACCGTGGCCTTGACGAATCTGTCATCAGAGAAATCCCAACCTTTCAGTTCATAAAAGGTGAAGGTGAGTATCATCATCAAGGTGTGTATGGCTGTGTGGTTTGTTTGACTGAGTTTCAAGAACATGATGTGCTAAAAGTTTTACCAAATTGCAACCATGCTTTTCACTTGGATTGCATTGACATTTGGCTTCAGAGCAATGCCAATTGTCCTCTTTGTAGATCAAGCATTTCAGGCAACACACACTGTCCATTTGAACATATCATAGCTCCAAGCTCTTCTCCTCAGGATTCTCAGTTACTTTCTAACATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTTGGTGGAGAACATGGGGGATTGTTACCACTGGTGCAACAAGAAAGAAATGACTCAAGTGGAAACCTAGCAATAGCACAGAGTAGAATTCACTCTCAGAAGGTTGCACACTCAAAACCAAGGAAGTGTCACCATGTTTCCATCATGGGAGATGAGTGCATTGATATCAGAAAGAAAGATGATCAGTTTTCTATTCAGCCTATTAGAAGATCTTTCTCAATGGATTCAGCAAATGATAGACAAGTTTACTTGGATGTTCAAGCAATTATACAACAAGATAGACATCAGAATGAGGCTAGTGCCAGCGAGGATTGTAATAGCAGAAGTCGAAGAGCATTCTTTCCATTCTGTTATGGAAAAGGGTCTAAAAATGCAGTCCTTCCTTTGGAGAATGATGTTTAA 1041 0.415 MALNKNHSYKLGYQALPPIITQPSTTLHHPPQPVSGYAFPIFAIVVVSILATVLLLLSYFTFLTKCCSNWQQFNPLRWISILRARQNEDLFIALSPAMWNRGLDESVIREIPTFQFIKGEGEYHHQGVYGCVVCLTEFQEHDVLKVLPNCNHAFHLDCIDIWLQSNANCPLCRSSISGNTHCPFEHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEHGGLLPLVQQERNDSSGNLAIAQSRIHSQKVAHSKPRKCHHVSIMGDECIDIRKKDDQFSIQPIRRSFSMDSANDRQVYLDVQAIIQQDRHQNEASASEDCNSRSRRAFFPFCYGKGSKNAVLPLENDV. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05655 346 FunFam E3 ubiquitin-protein ligase ATL6 94 179 - -
Seca8g05655 346 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Seca8g05655 346 PANTHER RING-H2 FINGER PROTEIN ATL16 21 343 IPR044600 GO:0016567|GO:0016740
Seca8g05655 346 SUPERFAMILY RING/U-box 130 177 - -
Seca8g05655 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 178 IPR013083 -
Seca8g05655 346 Pfam Ring finger domain 131 173 IPR001841 -
Seca8g05655 346 CDD RING-H2_EL5-like 131 173 - -
Seca8g05655 346 SMART ring_2 131 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05655 Seca-Chr8 148291133 148292173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05655 30 309 C3H Transcription Factor Family AT1G04360 45.455 2.58e-74 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05655 K19041 - gmx:100809883 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05655 8 148291133 148292173 Seca8g05655 8 148291133 148292173 ECH
Seca8g05655 8 148291133 148292173 Seca8g04324 8 123488986 123490050 PCT
Seca2g04368 2 128610310 128611998 Seca8g05655 8 148291133 148292173 PCT