Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05651 ATGGAAGAGGACTCAAAGGAGAAAAAGGCCAAGGAAGAGTCACCGAAAGAAACACGATACAGAGGAGTGCGGCGGCGTCCGTGGGGAAAGTTCGCCGCCGAGATTCGTGACCCTGCTCGGCACGGTGCCCGTGTGTGGCTGGGAACATTTCTAACGGCGGAGGAGGCTGCAAGAGCTTATGATCGTGCTGCCTTTGAGATGAGAGGTCCTTTAGCTATTCTCAACTTTCCAAATGAGTACCCTTCTATGAACTCCTTTGTATCATTAGCACATTCTGCTTCAGCTTCTTGCTCTGCATCATCAATGCCAACTGAGAATGGTAAACAAGTTATTGAGCTCGAGTGTTTGGATGATAAATTGTTAGAGGATCTTCTTGATTGTGATGACAATCAAAATTCCATCCAGAAAGACTTGCCTCAGTAG 423 0.4728 MEEDSKEKKAKEESPKETRYRGVRRRPWGKFAAEIRDPARHGARVWLGTFLTAEEAARAYDRAAFEMRGPLAILNFPNEYPSMNSFVSLAHSASASCSASSMPTENGKQVIELECLDDKLLEDLLDCDDNQNSIQKDLPQ. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05651 140 MobiDBLite consensus disorder prediction 1 21 - -
Seca8g05651 140 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Seca8g05651 140 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Seca8g05651 140 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Seca8g05651 140 PANTHER DNA-BINDING DOMAIN 6 126 IPR044808 GO:0003700|GO:0009873
Seca8g05651 140 FunFam Ethylene-responsive transcription factor 2 18 78 - -
Seca8g05651 140 CDD AP2 18 78 IPR001471 GO:0003700|GO:0006355
Seca8g05651 140 Pfam AP2 domain 18 69 IPR001471 GO:0003700|GO:0006355
Seca8g05651 140 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Seca8g05651 140 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Seca8g05651 140 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05651 Seca-Chr8 148251114 148251536 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05651 16 131 AP2-EREBP Transcription Factor Family AT3G23230 59.350 5.77e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g05651 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05651 - - gmx:100810414 161.384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05651 8 148251114 148251536 Seca8g05651 8 148251114 148251536 ECH
Seca2g04369 2 128621637 128622047 Seca8g05651 8 148251114 148251536 PCT