Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05644 ATGGTTGACTTCGACTTCTCCAAGGACTCAACAATAGGAGACAACAACAAAGCCAAAACATTAATGCAGATGCAGAGTAATGATAATAATAGCAAGAAGGAAATGTCATTTATAGGTGTGAGGAAGAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGACACAACAAGGAACGGCGCCAGGGTATGGCTTGGAACCTTCGGCACTGCAGTATGA 216 0.4398 MVDFDFSKDSTIGDNNKAKTLMQMQSNDNNSKKEMSFIGVRKRPWGKFAAEIRDTTRNGARVWLGTFGTAV. 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05644 71 ProSiteProfiles AP2/ERF domain profile. 36 71 IPR001471 GO:0003700|GO:0006355
Seca8g05644 71 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Seca8g05644 71 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Seca8g05644 71 SUPERFAMILY DNA-binding domain 37 70 IPR016177 GO:0003677
Seca8g05644 71 SMART rav1_2 36 71 IPR001471 GO:0003700|GO:0006355
Seca8g05644 71 Pfam AP2 domain 37 69 IPR001471 GO:0003700|GO:0006355
Seca8g05644 71 Gene3D AP2/ERF domain 36 71 IPR036955 GO:0003700|GO:0006355
Seca8g05644 71 CDD AP2 37 70 IPR001471 GO:0003700|GO:0006355
Seca8g05644 71 PANTHER DNA-BINDING DOMAIN 23 70 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05644 Seca-Chr8 148160151 148160366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05644 24 70 AP2-EREBP Transcription Factor Family AT3G23220 63.830 1.77e-17 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g05644 AP2 3.5e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05644 K14516 - gmx:100811486 89.3521