Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05643 ATGGTGAACAAGTCTGAAGCTAAAACATTAGTGCAGGTGCAGAAGCAGAGTAATGAGAATAATAACAAGAAGGAAAGGTCATCATATATAGGAGTCTGGAAAAGGCTTTGGGGTAAATTTGCAGCAGAAATCAGAGATACAACAAGGAACGGCGCCAGGGTATGGCTTGGAACCTTTGACACTGCAGAGGCTGCTGCTTTAACTTATGACCAAGCTGCTTTTTCCATGAGAGGCCACAACGCTGTTCTCAATTTTCCAGTCAAAAGGGTCAAAGAATCTCTGCAAGAGATCCAATATGATTGCAGTACCAACAGTTGTTCACCTGCACTTACACTCAAGGAGAGGCACTGCATCCAAAGAAAATTGTCTTCATCAAAAGCTAAAAAGGGTAAAGGGAAACAGGAATCAGAGGCACCAAGACCAAATGTGTTGGTGTTAGAGGACTTGGGAGTTGAATATCTTGAGCAGCTTCTAACCATATCCGACCAAACTGCAACCACTAGTTCTAGCTACTTCAAGTAA 522 0.4272 MVNKSEAKTLVQVQKQSNENNNKKERSSYIGVWKRLWGKFAAEIRDTTRNGARVWLGTFDTAEAAALTYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYDCSTNSCSPALTLKERHCIQRKLSSSKAKKGKGKQESEAPRPNVLVLEDLGVEYLEQLLTISDQTATTSSSYFK. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05643 173 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Seca8g05643 173 Pfam AP2 domain 28 79 IPR001471 GO:0003700|GO:0006355
Seca8g05643 173 SUPERFAMILY DNA-binding domain 27 87 IPR016177 GO:0003677
Seca8g05643 173 ProSiteProfiles AP2/ERF domain profile. 28 86 IPR001471 GO:0003700|GO:0006355
Seca8g05643 173 SMART rav1_2 28 92 IPR001471 GO:0003700|GO:0006355
Seca8g05643 173 FunFam Ethylene-responsive transcription factor 2 27 88 - -
Seca8g05643 173 PANTHER DNA-BINDING DOMAIN 14 163 IPR044808 GO:0003700|GO:0009873
Seca8g05643 173 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Seca8g05643 173 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Seca8g05643 173 Gene3D AP2/ERF domain 28 88 IPR036955 GO:0003700|GO:0006355
Seca8g05643 173 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05643 Seca-Chr8 148148820 148149341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05643 21 166 AP2-EREBP Transcription Factor Family AT3G23240 53.425 6.39e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g05643 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05643 K14516 - gmx:100811486 211.46