Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05638 ATGAAGAAGCAACAGAAAGCATATGAGATGCCTAATAATATGTATTCCCCTAATTTCTTTGAAAAACCAGATTGGGAAATGCTGCAGGAGCCTTCAGAAATTTTGTTTGAAACATTTCCAAGCAATCATGACCCTTTTCATGATTCTCTTTCCTTCGACATGGTGAACAAGTCTGAAGCTAAAACATTAGTGCAGATGCAGATGCAGAGTAATGATCATAATAGTAATAAGGAAAGGTCATGTATAGGAGTGAGGAAAAGGCCTTGGGGAAAATTTGCAGCAGAGATCAAAGACACAACAAGGAATGGCGCCAGGGTATGGCTTGGAACCTTTGACAATGCAGAGGCTGCTGCTTTAGCTTATGACCAAGCTGCTTTCTCCATGAGAGGCCATAATGCTGTTCTCAATTTTCCAGTCAAAAGGGTCAAAGAATCTCTGCAACAGATCCAATATGATTGTAGTACCAACAGTTGTTCACCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAATTGTCTTCATCAAAAGCTAAAAAGGGTAAAGGGAAATTACAGGTATCAGAGGCACCAAGACCAAATGTGTTGGTGTTAGAGGACTTGGGAGTTGAATATTTAGAGCAGCTTCTAACCATATCCGATCAAACTGCAACCACTAGTTCTAGCTACTTCAAGTAA 681 0.4068 MKKQQKAYEMPNNMYSPNFFEKPDWEMLQEPSEILFETFPSNHDPFHDSLSFDMVNKSEAKTLVQMQMQSNDHNSNKERSCIGVRKRPWGKFAAEIKDTTRNGARVWLGTFDNAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQQIQYDCSTNSCSPALALKERHCIQRKLSSSKAKKGKGKLQVSEAPRPNVLVLEDLGVEYLEQLLTISDQTATTSSSYFK. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05638 226 CDD AP2 83 139 IPR001471 GO:0003700|GO:0006355
Seca8g05638 226 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
Seca8g05638 226 PANTHER DNA-BINDING DOMAIN 59 215 IPR044808 GO:0003700|GO:0009873
Seca8g05638 226 SMART rav1_2 83 144 IPR001471 GO:0003700|GO:0006355
Seca8g05638 226 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Seca8g05638 226 SUPERFAMILY DNA-binding domain 81 139 IPR016177 GO:0003677
Seca8g05638 226 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Seca8g05638 226 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Seca8g05638 226 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Seca8g05638 226 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05638 Seca-Chr8 148107576 148108256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05638 39 219 AP2-EREBP Transcription Factor Family AT3G23240 44.865 3.13e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca8g05638 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05638 K14516 - gmx:100527364 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05638 8 148107576 148108256 Seca8g04318 8 123166200 123166832 ECH
Seca8g05638 8 148107576 148108256 Seca8g05910 8 152078675 152079340 ECH
Seca8g05638 8 148107576 148108256 Seca8g05638 8 148107576 148108256 ECH
Seca8g05638 8 148107576 148108256 Seca2g04371 2 128659716 128660411 PCT