Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05637 ATGACTTCCCCTTATTTCTTTGAGAACTCATCCGATTGGGAAATGGTGCTGCAGTCTTCAGAAATTTCGTTCCAATCATTTTCAACCAATCATGATTCTCTGTCCTTTAATATGGTTGTTGACTTTTCCATGGCTACAACAGAAGGAAACACCAATGAAGAAGCAAAGCAATTGGTGAAGAAGTCAGAAGCCAAAACATCAATGCAGATGCTGAATAATAGCAATAAGGAAATGTCATATATAGGAGTGAGGAAAAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGATACAACAAGGAATGGCGCTAGGGTATGGCTTGGAACCTTTGACAATGCAGAGGCTGCTGCTTTAGCTTATGACCAAGCTGCTTTCTCCATGAGAGGCCATAATGCTGTTCTCAATTTTCCAGTCAAAAGGGTCAAAGAATCTCTGCAACAGATCCAATATGATTGTAGTACCAACAGTTGTTCACCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAATTGTCTTCATCAAAAGCTAAAAAGGGTAAAGGGAAATTACAGGTATCAGAAGCACCAAGACCAAATGTGTTGGTATTAGAGGACTTGGGAGTTGAGTATCTTGAGCAGCTTCTAACCATATCCGATCAAACTGCAACCACCAGCTACTTCCAGTAA 672 0.4137 MTSPYFFENSSDWEMVLQSSEISFQSFSTNHDSLSFNMVVDFSMATTEGNTNEEAKQLVKKSEAKTSMQMLNNSNKEMSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFDNAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQQIQYDCSTNSCSPALALKERHCIQRKLSSSKAKKGKGKLQVSEAPRPNVLVLEDLGVEYLEQLLTISDQTATTSYFQ. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05637 223 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Seca8g05637 223 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Seca8g05637 223 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Seca8g05637 223 CDD AP2 80 138 IPR001471 GO:0003700|GO:0006355
Seca8g05637 223 PANTHER DNA-BINDING DOMAIN 45 211 IPR044808 GO:0003700|GO:0009873
Seca8g05637 223 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Seca8g05637 223 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Seca8g05637 223 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Seca8g05637 223 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
Seca8g05637 223 FunFam Ethylene-responsive transcription factor 2 78 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05637 Seca-Chr8 148068607 148069278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05637 68 218 AP2-EREBP Transcription Factor Family AT3G23240 52.980 2.21e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g05637 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05637 K14516 - gmx:100811486 264.618