Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05636 ATGACTTTGACTTCCCCTAATTTCTTTCAAAACCCAGATTGGGAGCCTTCACAAATTTTGTTCGAATCATTTTCAAGCGATCATAACCCTTTTCATGATGATTCTCTTTCGTTCGATATGGTTGACTTGGACTTCTCCAAGGACTCAACAGAAGCAAAGCAATTGGTGAAGATGACTGAAGCTAAAACATCAGCGCAGATGCAGAGTAATAATGAGAATAATAACAAGAAGGAAAGGTCGTCATATATAGGAGTGAGGAAGAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGATACCACAAGGAACGGTGCTAGGGTATGGCTTGGAACCTTTGACACTGCAGAGGCTGCTGCTTTAGCTTATGACCAAGCTGCTTTTTCCATGAGAGGCCATAACGCTGTTCTCAATTTTCCAGTCAAAATGGTCAAAGAATCTCTGCAAGAGATCCAATATGATTGCAGTACCAACAGTTGTTCACCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAATTGTCTTCATCAATAGCTAGAAAGGGTAAAGGGAAATTACAGGTATTAGAAGCACCAAGACCAAATGTGTTGGTATTAGAGGACTTGGGAGTTGAGTATCTGGAGCAACTTCTAACCATATCCGATCAAACTGCAACCACTACTAGTACTAGCTACTTCAAGTAA 687 0.4163 MTLTSPNFFQNPDWEPSQILFESFSSDHNPFHDDSLSFDMVDLDFSKDSTEAKQLVKMTEAKTSAQMQSNNENNNKKERSSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFDTAEAAALAYDQAAFSMRGHNAVLNFPVKMVKESLQEIQYDCSTNSCSPALALKERHCIQRKLSSSIARKGKGKLQVLEAPRPNVLVLEDLGVEYLEQLLTISDQTATTTSTSYFK. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05636 228 PANTHER DNA-BINDING DOMAIN 53 216 IPR044808 GO:0003700|GO:0009873
Seca8g05636 228 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Seca8g05636 228 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Seca8g05636 228 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Seca8g05636 228 Pfam AP2 domain 81 132 IPR001471 GO:0003700|GO:0006355
Seca8g05636 228 Gene3D AP2/ERF domain 81 142 IPR036955 GO:0003700|GO:0006355
Seca8g05636 228 MobiDBLite consensus disorder prediction 61 81 - -
Seca8g05636 228 SUPERFAMILY DNA-binding domain 80 141 IPR016177 GO:0003677
Seca8g05636 228 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Seca8g05636 228 FunFam Ethylene-responsive transcription factor 2 80 140 - -
Seca8g05636 228 CDD AP2 80 140 IPR001471 GO:0003700|GO:0006355
Seca8g05636 228 MobiDBLite consensus disorder prediction 61 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05636 Seca-Chr8 148045439 148046125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05636 74 220 AP2-EREBP Transcription Factor Family AT3G23240 53.061 1.92e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g05636 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05636 K14516 - gmx:100527364 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05636 8 148045439 148046125 Seca8g05636 8 148045439 148046125 ECH
Seca8g05636 8 148045439 148046125 Seca8g05635 8 148000017 148000445 PCT