Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05635 ATGGAGGGAGAGAGATCATCATCAGTTTCTTCAAATGGAAATACAGAAGTTCGGTATAGAGGGATTCGTAGGAGGCCATGGGGTAAGTTTGCAGCAGAGATTCGTGACCCCACAAGGAAAGGGACTCGCGTATGGCTTGGAACCTTTGACACCGCTGAGGAGGCTGCACGGGCTTATGATGCTGCTGCTTTTCATTTCCGTGGCCACAGAGCTATTCTCAACTTCCCAAATGAGTACCAGGCTCCTAATCCAAACTCTAATTCATTACCTATGCCTCTCACTCTGCCTCCATCTTCTTCTTCTTCTTCCTGCTCTGGTAATAATTATAAGAGCCTTGTCAGTGATGACACTTTTGAGTTAGAATATTTGGATAATAAGTTGCTGGAAGAACTCCTTCAGGTTCAGGCGCAAGATGACAGGCACAAGTGA 429 0.4592 MEGERSSSVSSNGNTEVRYRGIRRRPWGKFAAEIRDPTRKGTRVWLGTFDTAEEAARAYDAAAFHFRGHRAILNFPNEYQAPNPNSNSLPMPLTLPPSSSSSSCSGNNYKSLVSDDTFELEYLDNKLLEELLQVQAQDDRHK. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05635 142 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Seca8g05635 142 MobiDBLite consensus disorder prediction 78 107 - -
Seca8g05635 142 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Seca8g05635 142 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Seca8g05635 142 Pfam AP2 domain 18 69 IPR001471 GO:0003700|GO:0006355
Seca8g05635 142 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Seca8g05635 142 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Seca8g05635 142 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Seca8g05635 142 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Seca8g05635 142 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Seca8g05635 142 PANTHER DNA-BINDING DOMAIN 12 135 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05635 Seca-Chr8 148000017 148000445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05635 14 132 AP2-EREBP Transcription Factor Family AT3G23230 61.345 1.08e-42 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca8g05635 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05635 - - gmx:100500462 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05636 8 148045439 148046125 Seca8g05635 8 148000017 148000445 PCT