Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05634 ATGGAATTTGATTCTTCTTTCTTCCAATACCAATACCAATACCAAAACTCTGCTTTTGCAAACTCCTCTGTTTCTGCAGAGTCTTTCTCTTGGGAGGACTTCTTTTTCTTCAATGAAGACAACACCACCCTTCCTCCCTTTAACTTCACTGATGACCACTCATCACAAATCAAGGAATCATCTTTGGATTCCAACACTTCAGGCTCTCTAGTTAGCACTGAATCACAAGAAGTCTCCTCCAATAATTCAAATCATATCCAAGTCAAAGAAACAGATCATGCATTATCACCACCCAAGGAGGAGGAAAGTAGTAATAACAGAGAGAAGAGGCCTTACAGAGGAGTGAGGAGAAGGCCATGGGGAAAATTTGCTGCAGAGATAAGGGACTCAACAAGAAATGGGGTTAGAGTGTGGATTGGCACATTTGACACTGCTGAAGCAGCTGCTTTAGCTTATGATCAAGCAGCTTTGTCCACAAGAGGTTCCATGGCAGTGCTGAATTTCCCAGAGGAAGTGGTGAGGGAGTCACTCAAAGACATGGTCAACAAGCCATGGGAAGATGGTTCCTCTCCTGTGTTAGCACTCAAGAGGAAGCACACAATGAGAAGAAAGTCCAAAACCACTAACAAAAAGACCAAAAGGGAGAGCACTAGCAGGGAGTTAGAGATGCTTTCACAAAATGTGCTGGTTTTGGAGGATTTGGGTTCTGAATATCTAGAACAACTTCTGAGCTTGACTTCTTCTGAATTGCCATTTTAG 759 0.4282 MEFDSSFFQYQYQYQNSAFANSSVSAESFSWEDFFFFNEDNTTLPPFNFTDDHSSQIKESSLDSNTSGSLVSTESQEVSSNNSNHIQVKETDHALSPPKEEESSNNREKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMVNKPWEDGSSPVLALKRKHTMRRKSKTTNKKTKRESTSRELEMLSQNVLVLEDLGSEYLEQLLSLTSSELPF. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05634 252 MobiDBLite consensus disorder prediction 92 110 - -
Seca8g05634 252 MobiDBLite consensus disorder prediction 198 219 - -
Seca8g05634 252 MobiDBLite consensus disorder prediction 47 114 - -
Seca8g05634 252 PANTHER DNA-BINDING DOMAIN 69 244 IPR044808 GO:0003700|GO:0009873
Seca8g05634 252 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Seca8g05634 252 SMART rav1_2 111 175 IPR001471 GO:0003700|GO:0006355
Seca8g05634 252 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Seca8g05634 252 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Seca8g05634 252 CDD AP2 112 170 IPR001471 GO:0003700|GO:0006355
Seca8g05634 252 SUPERFAMILY DNA-binding domain 112 170 IPR016177 GO:0003677
Seca8g05634 252 ProSiteProfiles AP2/ERF domain profile. 111 169 IPR001471 GO:0003700|GO:0006355
Seca8g05634 252 Gene3D AP2/ERF domain 111 171 IPR036955 GO:0003700|GO:0006355
Seca8g05634 252 FunFam Ethylene-responsive transcription factor 2 110 170 - -
Seca8g05634 252 MobiDBLite consensus disorder prediction 47 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05634 Seca-Chr8 147982125 147982883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05634 104 244 AP2-EREBP Transcription Factor Family AT3G23240 62.411 7.93e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g05634 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05634 K14516 - gmx:100784784 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05634 8 147982125 147982883 Seca8g05634 8 147982125 147982883 ECH
Seca8g05634 8 147982125 147982883 Seca8g05634 8 147982125 147982883 PCT