Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05629 ATGGGGAGAGCTCCTTGCTGCGAGAAAATGGGGCTGAAGAAAGGGCCATGGACTCCAGATGAAGATCTCATCCTCATCAATCATATCAACACATATGGCCATAAAAATTGGCGTGCCTTGCCCAAACAAGCTGGGCTATTGAGGTGCGGAAAGAGTTGCAGACTGAGGTGGACAAATTATCTGAGGCCGGATATCAAACGGGGAAACTTTTCCAGAGAAGAGGAGGACACAATAATCAAGTTTCATGACATGTTGGGAAACAGATGGTCAGCTATTGCAGCAAGATTGCCGGGGCGCACAGATAACGAGATAAAGAATGTGTGGCACACTCACTTGAAGAAGAAGAGGCTGCCAAATGCAAAACAAATGCCGTCGCCCCAAAAGTTCAATAACCAATACCCAATACAAGAACCCGTGAATTTTCCCACTCTCATCAAAGCCGAAAGAACAGAGGAAAGGCCACTATCTCCTCCACAGTGTTCGACTAGCGACATGTCCACCCTCACCACTAGTGAAAGCAGTGAACACAACAGTAGCTTAGTTACTAATACTATTAAATGTGACATGGCCATGAATAACACTAGTACTGATGAATCTCTATCCCTATTATATGATGATTTCTGGTCCGAAGTTTTGTCAGCTCATAATTCCGTTGAGATAAGCAGTTTTCCGGCAATTGGTGCTACTGACCCCAAGTTTCAATTTCCATTATTGACCGAAGAAGGGGTCCATCTTGCTATTAATTCATCATGTAGTATATCTGATAGCACGGACTTTTGGTATGATGTTTACATGACAGCTGAGGAACTGCCAGAATTATTATAA 825 0.4352 MGRAPCCEKMGLKKGPWTPDEDLILINHINTYGHKNWRALPKQAGLLRCGKSCRLRWTNYLRPDIKRGNFSREEEDTIIKFHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKRLPNAKQMPSPQKFNNQYPIQEPVNFPTLIKAERTEERPLSPPQCSTSDMSTLTTSESSEHNSSLVTNTIKCDMAMNNTSTDESLSLLYDDFWSEVLSAHNSVEISSFPAIGATDPKFQFPLLTEEGVHLAINSSCSISDSTDFWYDVYMTAEELPELL. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05629 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 218 - -
Seca8g05629 274 MobiDBLite consensus disorder prediction 155 177 - -
Seca8g05629 274 CDD SANT 69 112 IPR001005 -
Seca8g05629 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca8g05629 274 Gene3D - 69 115 - -
Seca8g05629 274 CDD SANT 16 61 IPR001005 -
Seca8g05629 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca8g05629 274 MobiDBLite consensus disorder prediction 150 177 - -
Seca8g05629 274 FunFam MYB-related transcription factor 13 66 - -
Seca8g05629 274 Gene3D - 11 67 - -
Seca8g05629 274 SMART sant 13 63 IPR001005 -
Seca8g05629 274 SMART sant 66 114 IPR001005 -
Seca8g05629 274 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca8g05629 274 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca8g05629 274 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca8g05629 274 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca8g05629 274 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05629 Seca-Chr8 147914234 147915989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05629 1 273 MYB Transcription Factor Family AT2G31180 45.520 2.42e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g05629 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05629 K09422 - gmx:106794951 308.531