Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05625 ATGCCGTCACTACTGTCGCCGGGGAAAATCCACCGGCTGGAGATGGAGAATTTCAAGTCGTACAAGGGTTTCCAAGTTATTGGTCCCTTCTACGACTTCACAGCCATCATTGGCCCCAACGGTGCCGGAAAATCGAACCTCATGGACGCTATCAGCTTCGTGCTCGGCGTGAGGACCGGCCAGCTTCGTGGCGCGCAACTCAAGGACCTTATCTACGCCTTCGACGACAGGGAGAAGGAGCAGAAGGGGCGCAGGGCCTTCGTTCGCTTGGTTTACCAGCTCGCCAACAACTCCGAGATCCAATTCACCAGAACCATCACCGCCGCCGGCGCCAGCGAGTACCGCATCGACGGCAACGTTGTCACATGGGACGTCTACAATGCCAGGCTCAAGTCCCTCGGCATTCTTGTTAAGGCTCGCAATTTCTTAGTCTTTCAGGGTGATGTGGAATCCATTGCGTCTAAAAATCCCAAAGAGCTCACTGGCCTTATTGAGCAGATATCTGGCTCTGACGAGCTTAAGAGGGACTATGAGCAGTTTGAAGAAGAAAAAGGTGCTGCTGAGGAAAAATCAGCACTTGTTTATCAGAAGAAAAAGACGGTGGTTATGGAGAGAAAACAGAAGAAAGAACAGAAGGAAGAGGCAGAGAAACATCTCCGCTTGCAAGATCAATTGAAATCATTGAAGAAAGAACATTTCTTGTGGCAGTTGTTCAATATAGAAAACGATATTGTTAAAACAACTGAGGATCTTGAAGATGAGAAAAAAAGTCGTGAAGGTGTTATTGAAGAACTAGAAAAATTTGAAAATGAAGCCAGTAAAAAGAAAAAAGAGCAGGCCAAATATCTGAAAGAGGTTGCACTACGTGAAAAGAAAATTACTGAGAAAAGCAACAGACTTGACAAGAGTCAACCTGAGCTTCTGAAGTTAAAGGAGGAAATGACTCGTATCAATTCAAAAATTAAAAAAGGGAAGAAGGAGCTTGATAAGAAAAGGGAAGAACGGAGGAGGCATGCTGCTGATATTGCGGAGCTACAAAGGGGCATCCAGGATCTTACAGCAAAAATGGCAGACTTACAGGAAAAGGGTCGAGATGCTGGCGATCAGCTTAAGTTAGATGGCAGTGACTTGGAAGAATATTTTAGAATAAATGTGCAGATGGTGTTGCCTGCATATATAGTATTTCATTCAGTGGCCAGTTGCTTGTCATTAGCAGTTGGCCTTGCATTTTCAATTGGAACCTCTCCACAAGCAACGGAAATACTTTTACAAAAATTTGCACTGAATTCCATCACTGCTGTATTCTGGCAGCCCATTTCGTTCTACCTAAGGAACAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTTAGAGAGGAAAAAGAACTTCTAGACAGGCAGCAACATGCTGATAGTGAAGCTCAAAAGAATTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGAGTCTGAACTGAATTCACAGGAAGAACAGATGCGGGCAAGACTTAAAAAAATTCTTGATAATTCTGCAAAAAATAAGGATAGCCTTGTAAACTTGAAGAAAGAACTGCGTGTGATGCAGGACAAACATCGTGACTCCAAGAAAAAATATGAAAATTTGAAGTTAAAAATTGGTGAATTAGAAAATCAACTACGTGAATTGAAGGCTGATAGATATGAAAATGAGAGAGATGCTAAACTGTCTCAGGCTGTGGAGACTCTGAAACGCCTGTTTCAAGGAGTCCATGGTCGCATGACTGAACTTTGCAGGCCAACACAGAAGAAGTATAACCTAGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTTGTAGTTGAGGATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGCAATCTATTCGTGTGAAGCCAATAATGGAGAGACTGCGCACATTAGGGGGTACAGCAAAACTGGTTTTTGATGTGATTCAATATCCTTTTCTCACTAGTAGTGATTTGAAGAATCTGTGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTATTTGCTGTTGGGAATACTCTTGTCTGTGAAGATCTTGAGGAGGCCAAAATTTTAAGCTGGAGTGGTGAGAGGTTTAAAGTTGTAACTGTGGATGGAATTCTGCTGGCAAAATCTGGCACAATGACTGGTGGTACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTGAATAAAAAGAAAGAGCAGTATGAATCGGAGTTAGAAGAGCTAGGATCAATAAGAGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGCGAAGCATTGAAGACAAACTTTCAAATTTGAGCCAAGAAAAAGAGACCATTAAAGAAGAAATTGATCGTATCAGTCCAGATCTCCAGAAGTTAAATGATACTATTGACAAGAGGAATGCAGAATTACGTAAGCTTGAGAAGAGGATAAATGAAATCACTGATCGGATATACAAAAACTTCAGCAAGTCAGTTGGGGTTGCAAACATCCGAGAGTATGAAGAAAATCAACTCAAGGCTGCTCAAAATGTAGCAGAGGAGAGGCTGAATCTGAGTAGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGAGACATGAGTTCACGAATTCAAGAATTGGAATCTTCTCTAAGTTCTTTAGAGAATGATTTAAAACGGGTGCAGAACAAAGAGGCTGAAGCAAAGGTTGCAGCTGAAAAGGCTACTGAAGAGATTAATCAGTTTAAGGAAGAAGCTAAAGAGTGGAAATCAAAGTCAGAGGATTGTGAAAAGGAAATCCAAGAATGGAAGAAGAAAGCTTCTGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATAAACTCTAAGGAGGCACAGATTGAGCAGTTGATGCTGCAAAAACAGGAAATATTAGAGAAGTGTGAACTAGAACAGCTTAGCCTTCCAACCATATCAGATCCTATGGATACTGATAGCTCAACACCAGGTCCAGTTTTTGACTTTGATCAGCTCAGTAGGACACTGAGAGATAGGAGACCCTCTGACAGGGATAAAATTGAGGGGGACTTTAAGCAAAAAATGGACGCCTTAATATCTGAAATAGAAAGAACTGCACCGAATTTGAAGGCACTGGACCAATATGAGGCTCTGCTAGAAAAAGAAAGAGTTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAAGGAAAAAGCAGATAGATTCAATGCAGTTAAGCATCGGAGGTATGAGTTGTTCATGGATGCTTTCAACCACATATCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGTAACACGCATCCTCTGGGTGGAACTGCATACCTGAATTTGGAAAATGAAGATGATCCATTTCTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGAGCAGCTCTCTGGTGGGGAAAAGACTGTTGCTGCACTTGCGTTGCTATTCTCAATCCACAGTTATAAGCCTTCACCGTTTTTTATATTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTCGCAAAGGTTGCTGGCTTCATTCGTACAAGATCTTGTGAAGGAGCGAGGGCCAGTCAGGATGCTGATGGTGGAAGTGGTTTTCAGAGTATCGTGATATCACTGAAAGACAGCTTTTATGACAAAGCTGAAGCGTTAGTTGGGGTTTACAGGGACTCTGAAAGAGGCTGTTCGAGAACTCTCACATTTGATCTGACTAAATATCGGGAGTCTTAA 3882 0.4171 MPSLLSPGKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYQLANNSEIQFTRTITAAGASEYRIDGNVVTWDVYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQFEEEKGAAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQDQLKSLKKEHFLWQLFNIENDIVKTTEDLEDEKKSREGVIEELEKFENEASKKKKEQAKYLKEVALREKKITEKSNRLDKSQPELLKLKEEMTRINSKIKKGKKELDKKREERRRHAADIAELQRGIQDLTAKMADLQEKGRDAGDQLKLDGSDLEEYFRINVQMVLPAYIVFHSVASCLSLAVGLAFSIGTSPQATEILLQKFALNSITAVFWQPISFYLRNKEEAGMKTAKLREEKELLDRQQHADSEAQKNLEENLQQLRNRESELNSQEEQMRARLKKILDNSAKNKDSLVNLKKELRVMQDKHRDSKKKYENLKLKIGELENQLRELKADRYENERDAKLSQAVETLKRLFQGVHGRMTELCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRTLGGTAKLVFDVIQYPFLTSSDLKNLCKFDPSLEKAILFAVGNTLVCEDLEEAKILSWSGERFKVVTVDGILLAKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESELEELGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLSQEKETIKEEIDRISPDLQKLNDTIDKRNAELRKLEKRINEITDRIYKNFSKSVGVANIREYEENQLKAAQNVAEERLNLSSQLSKLKYQLEYEQNRDMSSRIQELESSLSSLENDLKRVQNKEAEAKVAAEKATEEINQFKEEAKEWKSKSEDCEKEIQEWKKKASAATTNISKLNRLINSKEAQIEQLMLQKQEILEKCELEQLSLPTISDPMDTDSSTPGPVFDFDQLSRTLRDRRPSDRDKIEGDFKQKMDALISEIERTAPNLKALDQYEALLEKERVVTEEFEAVRKEEKEKADRFNAVKHRRYELFMDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRTRSCEGARASQDADGGSGFQSIVISLKDSFYDKAEALVGVYRDSERGCSRTLTFDLTKYRES. 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05625 1293 SMART SMC_hinge_2 579 709 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Seca8g05625 1293 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Seca8g05625 1293 Pfam SMC proteins Flexible Hinge Domain 579 708 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Seca8g05625 1293 Coils Coil 170 190 - -
Seca8g05625 1293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 980 1276 IPR027417 -
Seca8g05625 1293 Coils Coil 868 888 - -
Seca8g05625 1293 Coils Coil 827 854 - -
Seca8g05625 1293 Coils Coil 307 369 - -
Seca8g05625 1293 Coils Coil 251 285 - -
Seca8g05625 1293 Pfam RecF/RecN/SMC N terminal domain 10 1274 IPR003395 -
Seca8g05625 1293 SUPERFAMILY Tropomyosin 773 998 - -
Seca8g05625 1293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 272 IPR027417 -
Seca8g05625 1293 Coils Coil 905 1009 - -
Seca8g05625 1293 Coils Coil 198 231 - -
Seca8g05625 1293 Coils Coil 467 501 - -
Seca8g05625 1293 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1293 - -
Seca8g05625 1293 Coils Coil 785 819 - -
Seca8g05625 1293 PIRSF SMC 429 1290 IPR024704 GO:0005524|GO:0016887
Seca8g05625 1293 PIRSF SMC 8 381 IPR024704 GO:0005524|GO:0016887
Seca8g05625 1293 SUPERFAMILY Smc hinge domain 543 758 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Seca8g05625 1293 Coils Coil 516 564 - -
Seca8g05625 1293 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Seca8g05625 1293 Gene3D - 1115 1293 IPR027417 -
Seca8g05625 1293 Gene3D - 8 230 IPR027417 -
Seca8g05625 1293 Gene3D - 541 659 - -
Seca8g05625 1293 Coils Coil 751 771 - -
Seca8g05625 1293 Gene3D - 671 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05625 Seca-Chr8 147865687 147879746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05625 8 114 Structural Maintenance of Chromosomes family AT5G61460 33.333 7.62e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05625 K06636 - gmx:100791953 1954.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05625 8 147865687 147879746 Seca8g05625 8 147865687 147879746 ECH