Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05624 ATGGGGCGCGTTCGGTTGAAGACGGTGAAGAAGTCGTCTCGCCAAGTGATAGAGAGGTACTACTCTCGAATGACGCTGGACTCCCACACGAACAAGAAGGTTCTGGAGGAAGTGGTGAGCGTGCTCTTGATTGGGGTCCTGGTGGTGGCCCTAACCACATTGCCTCAAGAAGATTTGGATTTGGAGGTACTGAATTTACTAATTTTCTGGTTCTAG 216 0.5 MGRVRLKTVKKSSRQVIERYYSRMTLDSHTNKKVLEEVVSVLLIGVLVVALTTLPQEDLDLEVLNLLIFWF. 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05624 71 Gene3D - 1 42 IPR036401 GO:0003735|GO:0005840|GO:0006412
Seca8g05624 71 Pfam Ribosomal S17 1 41 IPR001210 GO:0003735|GO:0005840|GO:0006412
Seca8g05624 71 Coils Coil 71 71 - -
Seca8g05624 71 SUPERFAMILY Rps17e-like 1 41 IPR036401 GO:0003735|GO:0005840|GO:0006412
Seca8g05624 71 PANTHER 40S RIBOSOMAL PROTEIN S17 1 40 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05624 Seca-Chr8 147859430 147859645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05624 1 39 Cytoplasmic Ribosomal Protein Gene Family AT2G05220 87.179 5.98e-19 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05624 K02962 - zof:122025653 63.929