Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05620 ATGCATATAGGTGAAACGGATACAGCTTCAGTGAAATGTCTAATCAACAGCATTTCTCGATTCATTCATTTGGTTTCTTGCCAAACAGTGAGACCTATGCCCTTCCAGAAAATCTGTAATAATATGGTTGAGGTGTTAAAGCGTTTGAAGCCAGTTCTTGATGATGTTATGGATTACAAAATTCCTTTAGATGAAAATCTATGTAAAGAGTGTGAAGAATTGGATATACGGATTAATGAAGCTAGAGATTTCATTGAAAAATGGGGTCCAAAGATGAGCAAGATTCACAGTGTTCTACAAAGTGGGACATTGTTGATCAAGTTACAGAGCACTTCACTTGATATATGTCACATGATTGTTAGATCCTTACAGTCACCTCCATGTGCATCAGTTTTAGCTAATCTTCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAAAGGCAATGGTCTATATAGAAGAAGCACTGAGAAACCAAAGAGATAATATTGAACCGTGCAATGACCATCTAAAGGAGATTATTGAGTTGCTTAAATTGACTTCCAACCAGGAGCTCTTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCTGAAGTCAATAAGATGAAAGGGGACTTGGAAGAAATTAATGAAATTGTGAATCTTGTCCGCAATTTACGTGATTATGTGATGAAAACTGAGTACCCTGTAGTCAAGAGTGGTGTCTCAGTCCCTCCATACTTCCGCTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCTGGTCAAACTTATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCCAAGACACGTCAGAGACTTACTCATACAAATCTCACTCCCAATTATACTGTCAAAGCTATGATAGCAAATTGGCGTGAGGAAAATAATATCCAACTTTCCAGTAACTCTGAGAACAATAATTCTTCCCGTATCACATCCCCTTCATATTGTTCATTGCCTCAAGATTTTGCTCATGCATGTGGTTTTGGGTCTTTACCTTGTAGCAATTCCACTTCAAGATCATCTCTTCAAACTGGAAATGCATTTGAGAAACAAAAGGGTGATAACTCTTTCAGATTACATGGAGAATGCAATGGATTCCAGAGTGGAGCAACAGAAAAGTGTGAGCAACAGTCCCCATTTATTCACAGCAGAAGTGATTCATTCTCAAGTTCAATTTCTAGTACTGATTGCGTGCTTGCAGTTTCCAAAGAGGTGTCAGGGATATCCAATAAGCACCAAAATGTGAAGGTGTTGTCTGGAGAAATCAGAAACGTGTGTCCTGCTTCTCCTGGTAATAAACAATCAAGGATATCTCCTTCAATATCTGGAAAACAATTTGAAAGCCCTGGATCAAATTTGGGAGGGCTGGAGAATGGAAATACTAATGATGGTAATACCAATAATAGCCATCCTGTTCTCAACTCAGGATCGGATGAATTAACCACTTCATCACATGTCAATAAATTGATTGACAACCTTCACAGTCAATCAATTGAAGTGCAGACTACAGCTGCAGAAGAATTGAGGCTCCTCACAAAGCATAACATGGAAAACCGTGTCATTGTAGGGCAGTGTGGGGCTGTCATGCCTTTACTTTCACTGTTATATTCAGATGTGAAGATAACACAAGAGCATGCTGTGACAGCTCTGCTGAATTTGTCACTTAATGAAGACAACAAGGCCTTGATTATGGAAGCAGGAGCCATAGAACCACTTATCCATGTTCTGAAAACAGGAAATGATGGGGCCAAGGAGAATTCTGCTGCAGCTCTATTCAGCCTCTCCGTAATAGAGAACAATAAGGAAAAAATTGGCCGTTCTGGTGCAGTTAGAGCTTTGGTGGATCTTCTTGCCTCAGGAACACTTAGAGGTAAGAAGGATGCTGCTACTGCTTTATTCAACCTTTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCCGGAGCTGTGAAATTTCTGGTTCGGTTAATGGACCCTGCTGATGGAATGGTTGATAAAGCTGTTGCTCTTCTGTCAAACCTGTCAACAATTACAGAGGGCCGATTAGAAATTGCAAGGGAAGGTGGCATCCCATTACTAGTTGAACTTGTTGAATCGGGTTCTCAGAGGGGAAAGGAAAATGCTGCCTCCATTCTCTTGCAATTATGCCTTCATAGTTCCAAGTTTTGTATTCTGGTTTTGCAAGAAGGAGCTGTACCTCCCTTAGTTGCATTGTCTCAATCTGGTACACCAAGAGCAAAGGAAAAGGCACAGCAGCTTCTCAGTCATTTTCGTAATCAGCGGGAAGGAGCTATTGGGAAAGGAAAATCATGA 2367 0.4039 MHIGETDTASVKCLINSISRFIHLVSCQTVRPMPFQKICNNMVEVLKRLKPVLDDVMDYKIPLDENLCKECEELDIRINEARDFIEKWGPKMSKIHSVLQSGTLLIKLQSTSLDICHMIVRSLQSPPCASVLANLQHYIQELQCLKKEKAMVYIEEALRNQRDNIEPCNDHLKEIIELLKLTSNQELLKESIAVEKERLNAEVNKMKGDLEEINEIVNLVRNLRDYVMKTEYPVVKSGVSVPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLTPNYTVKAMIANWREENNIQLSSNSENNNSSRITSPSYCSLPQDFAHACGFGSLPCSNSTSRSSLQTGNAFEKQKGDNSFRLHGECNGFQSGATEKCEQQSPFIHSRSDSFSSSISSTDCVLAVSKEVSGISNKHQNVKVLSGEIRNVCPASPGNKQSRISPSISGKQFESPGSNLGGLENGNTNDGNTNNSHPVLNSGSDELTTSSHVNKLIDNLHSQSIEVQTTAAEELRLLTKHNMENRVIVGQCGAVMPLLSLLYSDVKITQEHAVTALLNLSLNEDNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIENNKEKIGRSGAVRALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVRLMDPADGMVDKAVALLSNLSTITEGRLEIAREGGIPLLVELVESGSQRGKENAASILLQLCLHSSKFCILVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAIGKGKS. 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05620 788 Coils Coil 189 216 - -
Seca8g05620 788 Gene3D - 496 618 IPR011989 -
Seca8g05620 788 Gene3D - 696 778 IPR011989 -
Seca8g05620 788 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 666 707 IPR000225 GO:0005515
Seca8g05620 788 SMART arm_5 614 654 IPR000225 GO:0005515
Seca8g05620 788 SMART arm_5 573 613 IPR000225 GO:0005515
Seca8g05620 788 SMART arm_5 532 572 IPR000225 GO:0005515
Seca8g05620 788 SMART arm_5 655 694 IPR000225 GO:0005515
Seca8g05620 788 SMART arm_5 695 735 IPR000225 GO:0005515
Seca8g05620 788 PANTHER U BOX DOMAIN-CONTAINING 34 776 - -
Seca8g05620 788 MobiDBLite consensus disorder prediction 445 497 - -
Seca8g05620 788 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Seca8g05620 788 MobiDBLite consensus disorder prediction 441 497 - -
Seca8g05620 788 Coils Coil 128 148 - -
Seca8g05620 788 Pfam Armadillo/beta-catenin-like repeat 617 653 IPR000225 GO:0005515
Seca8g05620 788 Pfam Armadillo/beta-catenin-like repeat 573 612 IPR000225 GO:0005515
Seca8g05620 788 Pfam Armadillo/beta-catenin-like repeat 534 571 IPR000225 GO:0005515
Seca8g05620 788 SUPERFAMILY RING/U-box 239 314 - -
Seca8g05620 788 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Seca8g05620 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 326 IPR013083 -
Seca8g05620 788 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 584 626 IPR000225 GO:0005515
Seca8g05620 788 FunFam RING-type E3 ubiquitin transferase 486 781 - -
Seca8g05620 788 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Seca8g05620 788 SUPERFAMILY ARM repeat 497 775 IPR016024 -
Seca8g05620 788 CDD RING-Ubox_PUB 242 294 IPR045210 -
Seca8g05620 788 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Seca8g05620 788 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 625 667 IPR000225 GO:0005515
Seca8g05620 788 FunFam RING-type E3 ubiquitin transferase 238 314 - -
Seca8g05620 788 Gene3D - 619 695 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05620 Seca-Chr8 147814639 147820626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05620 7 788 U-box Gene Family AT3G54790 54.408 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05620 - - gmx:100800949 1235.71