Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05618 ATGGGTCTTAAAGACGTTGGTGCTTCATTGCCTCCTGGGTTTCGATTTTATCCGAGTGATGAGGAATTGGTCCTTCACTACCTTTACAAAAAGATCACAAATGAGGAAGTTCTGAAGGGTACCTTGGTGGAAATTGACTTGCACACTTGCGAGCCATGGCAGCTTCCTGAGGTGGCTAAGCTCAATGCAACAGAATGGTACTTCTTCAGCTTTCGTGACCGCAAATATGCAACTGGCTATCGGACCAATCGTGCCACGACATCTGGCTATTGGAAAGCAACAGGGAAAGATCGTACGGTGTTTGATCCAATCACGCGTGAGGTTGTGGGAATGAGAAAAACTTTGGTGTTCTATAGGAACAGAGCTCCCAATGGCATCAAAACCGGTTGGATCATGCATGAGTTTCGCTTGGAGACCCCACACATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTATTTCACAAAGGCAAAGCAGACGACAACAGTAATGCCAAACTCATGTTTGAGAGCATAACTCCATCCCTAACTTTGGCTTCATCATCCCCAACCATGCCAGTTGGGTATAACCAACTTCCCCCTTTCTCTTCCTCAATTCATCACCCAAACCAAAATAACTCTTTCATCAATCTCCTTCACTTCTCTCATCAAGAAACTAATAATAGTAGTGTTACTCAAATTAGCCCCAAATGTGACGATGGATATGGCTTCTTATGGGACATGGATCTCGAAGAAAATAGCGCCTTCCAAGATGGAATGAGATTCGAGGTTGATAATAATAATAATAATAGCATGGTGTTGTTGTAA 807 0.4387 MGLKDVGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLVEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRTVFDPITREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKADDNSNAKLMFESITPSLTLASSSPTMPVGYNQLPPFSSSIHHPNQNNSFINLLHFSHQETNNSSVTQISPKCDDGYGFLWDMDLEENSAFQDGMRFEVDNNNNNSMVLL. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05618 268 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Seca8g05618 268 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Seca8g05618 268 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 215 - -
Seca8g05618 268 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Seca8g05618 268 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05618 Seca-Chr8 147736085 147740914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05618 9 173 NAC Transcription Factor Family AT1G76420 55.952 1.86e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca8g05618 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05618 - - gmx:100783645 430.639