Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05609 ATGGAGGAAGAGCAGGACCGAAATTTGCTCACTAGTTTGGGCGTAAAGTCTGCCAATCCCGAAGATATTGAACGCCGCGTTTTGGAAAAGGCTAGGACTAGGAATGATGTTGCTGAAGCTGAAGGGAGCACCAAGGAAGAATGTTCTCATTTACCTGAAACTGTTGATCCATCATCCACTGCCAAAGCGGAACTTCTTCAAAAGTTTAGGGCAGTAGAATTTGAAATAAATGCAGTCTCTTCCACTATTCGAGAATGTAGTGATGGTGGCGAGGACAACTCGGAGCAAGGGATTGCTGGGGGTGATTCCTCCGATGGTTCAAACCTTCAGCGTGTTCTTGCTGCTGATAGGCTGAGAAGCCTGAAGAACACAAAGGCTCAACTAGAGAAAGAGCTTGCGAATTTGTCTAAGGATAATGCTTCTGAAAGGGCTGACCATGAAAAACTGATCTTTAGCTTAGTTAGGGAAGACCGAAAGCCTCCCAAGAGGAAGCTTAAAGATCTTAAAAAATTGCACAAAAGCACGGGAAAGCAGCCTAGTACAGTCACTGGAAAACGGCTTAAGACAGTCTCATTTGGTGATGATATTGATTTTGATGCTGTTCTGGATGCAGCATCTGCAGGCTTTGTTGAAACGGAAAGAGATGAATTGGTCAGAAAAGGAATTTTAACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGCCGCTTTCAACAACCTGAAACATCAACTAGTCATAATGCAGCTGAGGAAGAAAATATTGATGATCTTGCTTCTTCCAGTGTTGAAAGAGCTGCCAGATCAATGTCCGAGGCAGCAAGAGCTCGCCCGACCACCAAGCTGCTTGAGTCTAAAGATGTACCCAAACTTGATGCACCCACTATTCCATTTCGCAGGCTCAAGAAACCACTAAAATTTCCCAAACATCTAAACAGAGAGGTGGAGCTGGATAAAGATTCGAAAAGGAAAAAGAGGCGACCTTTGCCTGATAGAAAATGGACCAAGCGTGTTTCTTGTGAGGATATGCAGCTGGAAGAAAATGAAAATGCAAACGGTTGCTTGGACACTTCCAGTTGTGAAAATTTAGAAGCACAAGATGTTGAACATGCTGAGTACGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAACTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTAGGTAAAACTATCCAGGTCTTATCATTTCTTGGTGCATTGCATTTTAGCGGCATGTACAAACCCAGCATTATTGTCTGTCCTGTTACACTATTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCAAAATTCAATGTAGAACTTTTGCATGATTCTGCTCAGGATTCTTCTCCTAGAAAAAAGCGAGCTAAATCCGATGAATCAGACTATGAAAGCAATAGTTCAAGTGACAATGATTATGGGAAAAGTGCACCATCTAAAAATGGAAGAAAATGGGAATCCCTGATAAATCGCGTCACAAGATCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGGATATTGGGGGACCAGTTGCTTGACATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAATAACCTTGGTCTGCAAGCAGCTACAAACTATACACCGCATCATAATGACTGGTGCACCTATTCAGAACAAACTGACTGAACTTTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTGCAGTTCCTATATCTGTTGGTGGGTATGCAAATGCTTCACCATTGCAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTTCGACGCATGAAGGCTGATGTAAATGCTCAACTTCCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGAAGTGGAGGAAATATTAGATGGACACAGGAATTCTCTTTCTGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGACCTACTTGAAAGGGACCATGCCTTCAGGAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGATTTTTTTGACTAATTCTGGTCATATTTACCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGGATGGCTTTAATAGATGAATTTAATGACTCAAGTGAGGTATTTATTTTCATTTTAACAACCAAAGTTGGGGGTTTGGGAACAAATCTTACTGGTGCAGATAGGGTGATCATCTTCGACCCTGATTGGAATCCTTCAACTGATATGCAGGTAAGTTTGCATTTTAATACATTATTTTATTCTTTAATTTGTTGA 2565 0.4136 MEEEQDRNLLTSLGVKSANPEDIERRVLEKARTRNDVAEAEGSTKEECSHLPETVDPSSTAKAELLQKFRAVEFEINAVSSTIRECSDGGEDNSEQGIAGGDSSDGSNLQRVLAADRLRSLKNTKAQLEKELANLSKDNASERADHEKLIFSLVREDRKPPKRKLKDLKKLHKSTGKQPSTVTGKRLKTVSFGDDIDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQPETSTSHNAAEEENIDDLASSSVERAARSMSEAARARPTTKLLESKDVPKLDAPTIPFRRLKKPLKFPKHLNREVELDKDSKRKKRRPLPDRKWTKRVSCEDMQLEENENANGCLDTSSCENLEAQDVEHAEYESSYVTLEGGLKIPDNIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFNVELLHDSAQDSSPRKKRAKSDESDYESNSSSDNDYGKSAPSKNGRKWESLINRVTRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEITLVCKQLQTIHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTEVEEILDGHRNSLSGIDVMRKICNHPDLLERDHAFRNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEIFLTNSGHIYRRMDGLTPVKQRMALIDEFNDSSEVFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQVSLHFNTLFYSLIC. 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05609 854 Pfam Helicase conserved C-terminal domain 742 840 IPR001650 -
Seca8g05609 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 840 IPR027417 -
Seca8g05609 854 SMART helicmild6 766 844 IPR001650 -
Seca8g05609 854 MobiDBLite consensus disorder prediction 234 280 - -
Seca8g05609 854 CDD SF2_C_SNF 735 840 - -
Seca8g05609 854 SMART ultradead3 388 620 IPR014001 -
Seca8g05609 854 Coils Coil 111 145 - -
Seca8g05609 854 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 404 603 IPR014001 -
Seca8g05609 854 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 854 IPR001650 -
Seca8g05609 854 MobiDBLite consensus disorder prediction 1 56 - -
Seca8g05609 854 PANTHER SNF2/RAD54 FAMILY MEMBER 131 840 - -
Seca8g05609 854 MobiDBLite consensus disorder prediction 477 493 - -
Seca8g05609 854 MobiDBLite consensus disorder prediction 84 108 - -
Seca8g05609 854 Gene3D - 360 652 IPR038718 -
Seca8g05609 854 MobiDBLite consensus disorder prediction 19 52 - -
Seca8g05609 854 CDD DEXHc_ERCC6 392 602 - -
Seca8g05609 854 MobiDBLite consensus disorder prediction 477 510 - -
Seca8g05609 854 Gene3D - 659 842 IPR027417 -
Seca8g05609 854 FunFam Protein CHROMATIN REMODELING 8 370 652 - -
Seca8g05609 854 Pfam SNF2-related domain 395 717 IPR000330 GO:0005524|GO:0140658
Seca8g05609 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 653 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05609 Seca-Chr8 147651342 147655697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05609 380 619 RAD5 or RAD16-like Gene Family AT3G16600 26.255 1.40e-16 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca8g05609 SNF2_N 2.7e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05609 K10841 - gmx:100820025 1354.73