Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05606 ATGATGAAAGTTGGATTTGAAGTCCTTCATGCAAATCCAAACATGATTCGTCCCCACATGCATGAAACCTGGGACTACCCAAATATTGCTGATTTGCAAGCTCCAATTCCAACCCCATCAAATCAATATCCAAAGCCACCAACTGAAAACCACTACCTAAACTTGGGGCAGAATGAGGTCTGTGATTGGGTGGAAAACATTTCCAAACACCTTGTTGAAGACATACCAGAAACCACTTCTGATAATAACAACTTGCTATCCAATACCCCAATAACAAGTCAATCAAACACCTTAGATTTTGATCATAACAACGATAATGTTTATGATCATGGGTTAAACCTGATAACCCTTCTAATGGAATGTGCAGTGGCAATCTCTGTGGACAACCTTGGTGAGGCTCACAGAATGTTACTAGAGATAACACAATTAGCCTCACCTTATAAACCATCATGTGCAGAACGTGTTGTTGCTTATTTTGCAAAGGCCATGACTAGCAGGGTAATGAATTCATGGCTTGGTGTATGTTCCCCTTTAATTGATCAAAGGAACATTCACTCATCATTCCAAGTTTTCAACAACATTTCCCCTTTCATAAAGTTTGCTCATTTCACTTCCAACCAAGCCATCCTTGAAGCAGTGAACCGAACTAACAGCATTCACATCATTGATTTAGACATCATGCAGGGGCTTCAATGGCCACCCTTTTTCCACATACTTGCCACAAGAATGGAGGGTCCACCAGAGGTTAGAATGACAGGCATGGGAACCTCAATGGAACTCCTTGTTGAAACAGGAAAACAGCTTTCCAACTTTGCAAGAAGGTTAGGATTGTCCTTCAAGTTCAACCCTGTTGCAACCAAATTTGGGGAAATTGATGTTTCCATGGTGCAAGTGAGGCATGGTGAGACACTTGCAGTGCATTGGTTGCAGCATTCTTTGTATGATGCAACTGGACCTGATTGGAAAACATTGAGGCTTCTTGAGGAGTTGGAGCCAAAAATCATAACTTTGGTAGAACAGGATGTGAACCATGGAGGGCCTTTCTTAGACCGTTTTGTTGGCTCCTTGCACTATTACTCTACCCTTTTTGATTCTCTTGGAGCATATTTGCATAGTGATGATTCTAGCAGGCACAGTGTGGAGCATGGCCTTCTCTCTAAGGAGATCAATAATATATTGGCCATAGGAGGCCCTGCAAGGAGTGGAGAGGACAAGTTTAGGCAATGGAGAAGTGAGCTTGCAAGACATTGTTTTGTGCAGGTTCCAATGAGTGCAAATTCAATGGCACAAGCACAGTTGATATTGAACATGTTTTCACCAGCTCATGGGTATAGCCTTGCACAAGTTGATGGCACATTAAGGTTTGGATGGAAGGATACCAGTTTATATACAGCTTCTGCATGGACCTCTAGTACTTCTAGGTAG 1425 0.4218 MMKVGFEVLHANPNMIRPHMHETWDYPNIADLQAPIPTPSNQYPKPPTENHYLNLGQNEVCDWVENISKHLVEDIPETTSDNNNLLSNTPITSQSNTLDFDHNNDNVYDHGLNLITLLMECAVAISVDNLGEAHRMLLEITQLASPYKPSCAERVVAYFAKAMTSRVMNSWLGVCSPLIDQRNIHSSFQVFNNISPFIKFAHFTSNQAILEAVNRTNSIHIIDLDIMQGLQWPPFFHILATRMEGPPEVRMTGMGTSMELLVETGKQLSNFARRLGLSFKFNPVATKFGEIDVSMVQVRHGETLAVHWLQHSLYDATGPDWKTLRLLEELEPKIITLVEQDVNHGGPFLDRFVGSLHYYSTLFDSLGAYLHSDDSSRHSVEHGLLSKEINNILAIGGPARSGEDKFRQWRSELARHCFVQVPMSANSMAQAQLILNMFSPAHGYSLAQVDGTLRFGWKDTSLYTASAWTSSTSR. 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05606 474 Pfam GRAS domain family 114 469 IPR005202 -
Seca8g05606 474 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 89 465 IPR005202 -
Seca8g05606 474 ProSiteProfiles GRAS family profile. 105 469 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05606 Seca-Chr8 147640568 147642046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05606 109 469 GRAS Transcription Factor Family AT3G54220 56.250 3.20e-140 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca8g05606 GRAS 2.9e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05606 - - gmx:100775656 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05606 8 147640568 147642046 Seca8g05606 8 147640568 147642046 ECH