Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05603 ATGGATCATGTGATTGGTGGGAAGTTTAAACTGGGAAGAAAAATTGGAAGTGGGTCTTTTGGGGAGCTCTATCTAGGTGTTAATGTACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAGGTCATTGGTGTCATGGAATCAGCTTCTTGCAAATGCAAGATAAGGCTGCCTACAATAGACCCGCAATGGGAACCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACTGGGGTTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGCCTGGAAGATTTATTTAATTACTGTAACCGGAAGTTCACATTGAAGACAGTTTTAATGCTTGCTGATCAATTAATTAGCAGAGTTGAATATATGCATTCAAGAGGTTTCCTGCACCGTGACATAAAGCCAGACAATTTTCTAATGGGCCTAGGACGTAAAGCAAATCAAGGTGCCAATAGAAGTCTTGTGGAAGACTTTCACAGATATGTGTACATTATTGATTATGGCCTTGCAAAAAAATACAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCCGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCCTGGCAAGGACTGAAAGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGACGAAGGTGTCAACTCCCATAGAGGTGCTCTGCAAATCATACCCCTCTGAGTTTGTATCTTACTTCCACTATTGCCGATCATTGAGGTTTGAGGATAAGCCAGATTATTCATATTTAAAGAGACTTTTCCGAGACCTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTCGACTGGACTATATTGAAGTATCCACAGATTAGTGGCAGCTCTAGAGGGCGGCATGGCACTGGCAAGGCAGCTATGAATGCGGGTCCAACTGTACAAAAACCAGAAAAGATCTCAGCTGGGAAAGACATTCGAGAGAAATACTCTGGTGCTGTTGAAGCATTCTCCCGGAGGAACCATGGAAGCTCTAGTCCTCATCATGGCGATCACACCAAACATAGGACTTTTGAGGATGTACCTGTGCACAAGGATTTGCACTATGCCCAACACAGCTCCACTAGATATGGAAGCAGCTCAAGAAAAGCCATAATCTCATCAAACAAGCCAATTTCTTCAGGTGACCACACTGGCAGGCTAACCTCAAGTGGGGCCCGTCCATCTGCTACACACAGAATTCAACCTGTGTATGACACCAAACAAGCAACTTATACACGCAATGGGTCTATGAGAGGCAACCGTGATGATCCTCTGAGGAGCTTTGAGCTTCTCTCTATCAGGAAGTAA 1476 0.4356 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLEVIGVMESASCKCKIRLPTIDPQWEPVKTRHPQLHYESKLYMLLQGGTGVPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLISRVEYMHSRGFLHRDIKPDNFLMGLGRKANQGANRSLVEDFHRYVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQISGSSRGRHGTGKAAMNAGPTVQKPEKISAGKDIREKYSGAVEAFSRRNHGSSSPHHGDHTKHRTFEDVPVHKDLHYAQHSSTRYGSSSRKAIISSNKPISSGDHTGRLTSSGARPSATHRIQPVYDTKQATYTRNGSMRGNRDDPLRSFELLSIRK. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05603 491 MobiDBLite consensus disorder prediction 414 457 - -
Seca8g05603 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Seca8g05603 491 MobiDBLite consensus disorder prediction 413 457 - -
Seca8g05603 491 SMART serkin_6 9 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05603 491 FunFam CK1 family protein kinase 58 362 - -
Seca8g05603 491 Gene3D Transferase(Phosphotransferase) domain 1 1 373 - -
Seca8g05603 491 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Seca8g05603 491 MobiDBLite consensus disorder prediction 337 367 - -
Seca8g05603 491 Pfam Protein kinase domain 98 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05603 491 PANTHER CASEIN KINASE-RELATED 9 390 - -
Seca8g05603 491 SUPERFAMILY Protein kinase-like (PK-like) 4 327 IPR011009 -
Seca8g05603 491 ProSiteProfiles Protein kinase domain profile. 9 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05603 491 CDD STKc_CK1_delta_epsilon 8 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05603 Seca-Chr8 147579298 147586019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05603 8 250 MAP Kinase Kinase Kinase AT1G54960 25.514 1.32e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca8g05603 Pkinase 6.9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05603 K08960 - gmx:100789031 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05603 8 147579298 147586019 Seca8g05603 8 147579298 147586019 ECH