Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05595 ATGAAGTGTCTACGCTCAGGGGAGCCATTGGGAGGAGTAGATGAAGTGTTTCCTTCATCTGAATCTCTTGTAATCAAGGACCTTTCCGCAAGTGGACATTCTTGCCTAGCCGGACAAGCTGATAAGAAGCCGGATACTGGCAATATAGAAGAAGCTGAATCATCTCTACGTGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTTTGCTAGGAAGATATGAATATCAGAAAGGAAACATAGTAGCTGCTTTACATGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAACAGAGAACGCCATAAGAAATATTCTCATAATCATGCCGAACCCCAGATATCTATACATGCTGTTGGTTTACTGTTGGAAGCAGTCTTCCTAAAAGCAAAATCTTTGCAGGTTCTTGGAAGGTTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTCTGGACATAGTGGAATCTTCATTGCCCGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCCTGAGCAAGGCAGTTGAACTGCTTCCAGAATTATGGAAACTTGCTGATTGTCCACGTGAAGCTACTTTGTCTTACCGGCGAGCACTCCTCCATCAATGGAATCTTGATGCAGAGACTATAGCAAGGATCCAGAAAGAGTTTATTGTTTTTCTTCTATATAATGGAGGAGAAGCAACACCCCCTGATCTCCGTTCCCAAATGGATGGCTCATTTGTACCAAGAAACAACATAGAAGAGGCTATACTTCTTTTGATGATTTTGCTAAGAAAAGTCACTCTTAATAGAATTGAGTGGGATCCTTCAATTCTAGACCACCTTTCATTTGCCCTGTCTGTTTCAGGAGATTTGACAGCTTTAGCCAATCAATTGGAAGAATTGCTCCCTGGGACCATCCATCGAAGAGAAAGGTACCATGCTCTAGCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCACTGAATCTTCTGAAAAAATTGTTGAGAAATAGAGAGGACCCAAAACATGTTCCAGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAACTCTAGTCTAGCAGGAGAAGGGGCAAGCTTTGCTCAGAGAGCGTTTGAGAGCTTGGATGGCAGATGTAATCAGTTAGAAAATCTCGCCAATTTCTTTCTAGGTGTTTCATTTTCAACAAACTCAAAATTGGCCATTTCTGATTCTGAGAGGTCTAAGAGACAATCTGACGCACTGCATTCCCTGGAAACTGCTGGCAGAATGACCAAGATGAGAGAGCCCCTTATACTATACCATCTTAGTTTAGAATATGCAGAACAAAGGAAGTTGGATGCTGCACTTTATTATGCAAAGTGCTCTCTAAAACTGGAAGGTGGTTCTAACATAAAAGGGTGGTTATTGGTAGCTCGGATATTATCTGCTCAAAAACGGTTTTTGGATGCCGAATCTATTATCAATGCTGCTTTGGATCAGACTGGGAAATGGGATCAGGTTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCGCAGGGCCAGTTAAGGAGTGTCATTGAGACATATACTCAACTTCTTGCCGTTCTTCAAATTCAGAGTAAAGGTTATGGTTCTTGGAAGAAGCTATATAAGGATAATAGAGATTGTGCTAGGAACTTTGAAGTGGAAATATGGCATGATCTTGCTTATGTGTACATCAGTCTTTTGCAGTGGCATGATGCAGAGGTGTGTCTTTTAAAATCGAAGGGCATTAAACCATACTCTGCTTCTAGATGTCATGCACTAGGTACAATGTATGAAGCAAAGGGCCTTTACAAAGAGGCTCTAAAAGCTTTCCGTGATGCTTTGGACATTGATCCTGGCCATGTACTGAGCTTAATCTCCACTGCTTTAGTTCTTAGACGATGCAGTGATCAATCAAACCCTGCAGTCAGAAGCTTACTGATGGATGCACTAAGGCATGACAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTTCTTCACAAGGCTGAGGATACAGTATCATCATTAGTTGAAGCTGCAGAATGTTTTCAAGCAGCACACTTTCTTGAAGAATCTGCACCTGTTGAACCTTTCAGATGA 2139 0.4147 MKCLRSGEPLGGVDEVFPSSESLVIKDLSASGHSCLAGQADKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRNRERHKKYSHNHAEPQISIHAVGLLLEAVFLKAKSLQVLGRFKEAAQSCKVILDIVESSLPEGLPDNFGAECKLQETLSKAVELLPELWKLADCPREATLSYRRALLHQWNLDAETIARIQKEFIVFLLYNGGEATPPDLRSQMDGSFVPRNNIEEAILLLMILLRKVTLNRIEWDPSILDHLSFALSVSGDLTALANQLEELLPGTIHRRERYHALALCYYGAGKDLVALNLLKKLLRNREDPKHVPGLLMASKICCENSSLAGEGASFAQRAFESLDGRCNQLENLANFFLGVSFSTNSKLAISDSERSKRQSDALHSLETAGRMTKMREPLILYHLSLEYAEQRKLDAALYYAKCSLKLEGGSNIKGWLLVARILSAQKRFLDAESIINAALDQTGKWDQVDLLRTKAKLQIAQGQLRSVIETYTQLLAVLQIQSKGYGSWKKLYKDNRDCARNFEVEIWHDLAYVYISLLQWHDAEVCLLKSKGIKPYSASRCHALGTMYEAKGLYKEALKAFRDALDIDPGHVLSLISTALVLRRCSDQSNPAVRSLLMDALRHDRLNASAWYNLGLLHKAEDTVSSLVEAAECFQAAHFLEESAPVEPFR. 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05595 712 ProSiteProfiles TPR repeat profile. 600 633 IPR019734 GO:0005515
Seca8g05595 712 Gene3D Tetratricopeptide repeat domain 108 554 IPR011990 GO:0005515
Seca8g05595 712 SUPERFAMILY TPR-like 313 503 IPR011990 GO:0005515
Seca8g05595 712 SUPERFAMILY TPR-like 509 681 IPR011990 GO:0005515
Seca8g05595 712 SMART tpr_5 474 507 IPR019734 GO:0005515
Seca8g05595 712 SMART tpr_5 566 599 IPR019734 GO:0005515
Seca8g05595 712 SMART tpr_5 132 165 IPR019734 GO:0005515
Seca8g05595 712 SMART tpr_5 439 472 IPR019734 GO:0005515
Seca8g05595 712 SMART tpr_5 510 543 IPR019734 GO:0005515
Seca8g05595 712 SMART tpr_5 600 633 IPR019734 GO:0005515
Seca8g05595 712 SMART tpr_5 670 706 IPR019734 GO:0005515
Seca8g05595 712 Gene3D Tetratricopeptide repeat domain 555 709 IPR011990 GO:0005515
Seca8g05595 712 PANTHER PROTEIN NPG1 1 712 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05595 Seca-Chr8 147459122 147464428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05595 1 712 Calmodulin-binding Proteins AT4G28600 58.425 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05595 K21843 - gmx:100800762 1192.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05595 8 147459122 147464428 Seca8g05595 8 147459122 147464428 ECH
Seca2g04412 2 129374566 129381575 Seca8g05595 8 147459122 147464428 PCT