Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05588 ATGGTTGCAGCCTTAACAACTGGTTCTCACTCCCGAAATGAACTCCGTTTCTCACACTGTGACTCAGATGAGGAAAATGCAGACTACAATCAACAGCAGTGGCAACACAATGATCAAGATTTCTCTTTGGCTGGAAGTGTTACTAGTAATGATTTTGAAGGGCAAAAAGCATTCCACAACAATGCTCAGAAACAGAAAGAAAAAGAAAAGAGAAGTATAATGAGCAATGAGCAAGGAGAAGATGACTACCTTTTGGCTGAGGCAAGACAACCATTGTGGCGCAAAGTTCCTGTATCTTCAAGCCTAATCAATCCATACCGCATAGTCATAGTTATGCGTCTAGTTATCCTAGTTTTCTTCTTCCACTTCCGCATCTCAACACCAGTACATGATGCAATGGCCTTATGGATAATCTCTGTGGTCTGTGAAATATGGCTGGCTTTGTCTTGGATGGTGGACCAACTCCCCAAGTGGTTCCCCATAACTCGTGAAACTTCATTGGAGCGCTTGTCCATAAGGTTTGAACGTGAAGGGGAACCAAATCTTCTAGCCCCAGTTGATGTCTTTGTTACCACTGCAGACCCTTTTAAGGAACCACCCATTATAACAGCAAACACTGTTCTATCAGTCTTGTCTTTTGATTACCCTGTTGATAAGGTTAGCTGCTATGTCTCAGATGACAGTGCATCTATGCTTCTCTATGATACCTTGGCACTAACTGCTGAGTTTGCAAGAATATGGGTTCCTTTCTGTAAAAAGTATAGCATTGAACCAAGGGCCCCAGAGTCTTATTTCTCTCATAAAGTTGATTACTTGAAAGATAAGGTGCACCCTACATTTGTAAGGGATCGCAGGGCCATGAAGAGAGAGTATGAAGAATTCAAGGTGAAAATTAATGTATTGGTTGCAAAGGCTCAGAAAAAACCAGAAGAGGGGTGGGTGATGCAAGATGGTAACCCATGGCCTGGGAATGAATCTGACAATCATCCAGGAATGATTCAGGTGTGTCTGGGAAGTGCTGGTGCACTAGACAATGAAGGCAAGGAACTACCTCGGCTTGTGTATGTTTCACGGGAAAAACGTCCTGGCTATCAACACCACAGGAAAGCTGGTGCCATGAATGCTCTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCGTTTGTGTTGAATCTGGATTGTGACCAATACATCAATAATAGCAAGGCTTTTAGAGAGGCTATGTGCTTTTTAATGGACCCCCAACTTGGAAAGAAGCTCTGTTATGTCCAATTTCCAAGAAGGTTTGATGGCATTGATTCCAATGATAGATATGCTAATCACAATACTGTATTCTTTGATATCAACATGAAATGCCTTGATGGGATTCAAGGTCCAGTATATGTTGGTACTGGATGTGTGTTCAACAGACAGGCATTATATGGCTATAAGCCACCATCTGAGAAAAGGCCAAAGATGAGCTGTTGCAGCTGGTCTTCATTCTGCTGTTGTTGCTCTGGTGACTCTCAGTCCACTTTTGATGTTGAAGAGACTGATGAAGGATTTGATGAGCAAGAGGAATCATCCTTAATGTCCCTGAAAATTTTTGAGAAAAGATTTGGACAGTCACCGGTTTTCATTGCTTCTGCTTTGATGGAAGATGGTGGACTTCCAAAAGGCACCAATGCCAGATTACTGATGAAGGAAGCCATTCATGTTATAAGCTGTGGCTATGAAGAGAAAACTGAATGGGGCAAAGAGATTGGGTGGCTTTATGGCTCAGTCACAGAAGACATCTTAACTGGGTTTAACATGCATTGTAGAGGATGGAAATCAGTGTACTGCATGCCTAAGAGAGCAGCTTTTAAAGGATCTGCTCCTATAAATCTATCAGACCGATTACACCAAGTTCTGAAATTGGCTTCAGGTTCTACTGAGATTTTCTTCAGTGGCTATTGCCCATTGTGGTATGGTTATAGCGGAAAACTGAAATGGCTACAGAGGCTGGCTTACACTAATGTCATCGTTTATCCATTCACTTCCATCCCTTTGCTCATATATTGTACAATTCCAGCGGTTTGTCTTCTGACCGGAAAGTTCATCATCCCCACTCTGACAAACCTTGCTAGCATATGGTTAATGGCTCTATTTATCTCCATCATCTTAACTTGTGTGCTAGAGCTTCGTTGGAGTGGGGTTAGCATTCAGGATTGGTGGCGCAATGAGCAATTTTGGATCATTGGAGGTGTTTCTGCACACCTTTTTGCTGTATTTCAAGGTCTCCTTAAAGTTGGTGGAGTAGACACTCATTTCACAGTGAGAGCAAAATCAGCAGATGACACTGTATTGGGACAACTCTATCTCTTCAAGTGGACTAATCTTCTCATCCCACCAACTAGTCTTGTAATCTTGAATATGGTGGGAATTGTGGCTGGACTCTCTGATGCCCTTAACAATGGCTATGTCTCATGGGGACCCTTATTTGGGAAGCTTTTTTTCTCTATCTGGGTCATTGTGCACCTATATCCTTTCCTCAAAGGTCTAATGGGAAGGCAAAACAGAACTCCTACCATAGTAGTTCTCTGGTCAACACTTCTAGCGTTAATTTTCTCAATGATTTGGGTGCGAATTGATATTTTCTTGCCCAAACAAATAGGTCCAATACTCAAACAATGTGGGATAGAATGCTAA 2670 0.4225 MVAALTTGSHSRNELRFSHCDSDEENADYNQQQWQHNDQDFSLAGSVTSNDFEGQKAFHNNAQKQKEKEKRSIMSNEQGEDDYLLAEARQPLWRKVPVSSSLINPYRIVIVMRLVILVFFFHFRISTPVHDAMALWIISVVCEIWLALSWMVDQLPKWFPITRETSLERLSIRFEREGEPNLLAPVDVFVTTADPFKEPPIITANTVLSVLSFDYPVDKVSCYVSDDSASMLLYDTLALTAEFARIWVPFCKKYSIEPRAPESYFSHKVDYLKDKVHPTFVRDRRAMKREYEEFKVKINVLVAKAQKKPEEGWVMQDGNPWPGNESDNHPGMIQVCLGSAGALDNEGKELPRLVYVSREKRPGYQHHRKAGAMNALVRVSAVLTNAPFVLNLDCDQYINNSKAFREAMCFLMDPQLGKKLCYVQFPRRFDGIDSNDRYANHNTVFFDINMKCLDGIQGPVYVGTGCVFNRQALYGYKPPSEKRPKMSCCSWSSFCCCCSGDSQSTFDVEETDEGFDEQEESSLMSLKIFEKRFGQSPVFIASALMEDGGLPKGTNARLLMKEAIHVISCGYEEKTEWGKEIGWLYGSVTEDILTGFNMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLKLASGSTEIFFSGYCPLWYGYSGKLKWLQRLAYTNVIVYPFTSIPLLIYCTIPAVCLLTGKFIIPTLTNLASIWLMALFISIILTCVLELRWSGVSIQDWWRNEQFWIIGGVSAHLFAVFQGLLKVGGVDTHFTVRAKSADDTVLGQLYLFKWTNLLIPPTSLVILNMVGIVAGLSDALNNGYVSWGPLFGKLFFSIWVIVHLYPFLKGLMGRQNRTPTIVVLWSTLLALIFSMIWVRIDIFLPKQIGPILKQCGIEC. 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05588 889 SUPERFAMILY Nucleotide-diphospho-sugar transferases 341 702 IPR029044 -
Seca8g05588 889 FunFam Cellulose synthase 303 477 - -
Seca8g05588 889 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 292 477 IPR029044 -
Seca8g05588 889 Pfam Cellulose synthase 186 880 IPR005150 GO:0016020|GO:0016760|GO:0030244
Seca8g05588 889 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 89 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05588 Seca-Chr8 147377760 147382187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05588 84 889 Cell Wall Biosynthesis AT5G17420 70.588 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05588 K10999 - gmx:100777278 1568.52