Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05585 ATGTCGAAGAGAGGTCGCGGTGGATCGGCTGGGAACAAGTTCCGTATGTCACTGGGTCTACCAGTGGCGGCGACGAACCTTTACATCATATCAGTGAAGGGGATCAAGGGTAGATTGAACCGTCTCCCTTCCGCTTGCGTTGGAGACATGGTGATGGCCACCGTGAAGAAGGGGAAGCCCGATCTCAGGAAGAAGGTGTTGCCAGCTGTCATCGTTCGTCAGCGCAAGCCCTGGCGCAGAAAGGACGGTGTTTTCATGTACTTCGAAGGTACCTGCCTCTTGTTCATTTCCTATTTCATCATGTTACGGATTAGCATATACTCTTTCCTTTTTATTAAATGTTGCTTCTATAATGGTTCTGCTATCACTGGTCCAATTGGAAAGGAATGTGCTGATCTATGGCCAAGGATTGCAAGTGCAGCCAATGCTATCGTATGA 438 0.4863 MSKRGRGGSAGNKFRMSLGLPVAATNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEGTCLLFISYFIMLRISIYSFLFIKCCFYNGSAITGPIGKECADLWPRIASAANAIV. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05585 145 Pfam Ribosomal protein L14p/L23e 24 145 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca8g05585 145 Gene3D Ribosomal protein L14 1 145 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca8g05585 145 SMART Ribosomal_L14_2 19 145 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca8g05585 145 Hamap 50S ribosomal protein L14 [rplN]. 1 145 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca8g05585 145 SUPERFAMILY Ribosomal protein L14 24 145 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca8g05585 145 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 24 144 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05585 Seca-Chr8 147318214 147320091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05585 1 145 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 73.548 6.14e-73 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05585 K02894 - jre:108981199 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05585 8 147318214 147320091 Seca8g05585 8 147318214 147320091 ECH
Seca8g05585 8 147318214 147320091 Seca2g04425 2 129565943 129566918 PCT