Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05583 ATGGCACCCAATCCAAAAGTGGCAGCAGCCTATCGTGCAATGGCAAATCTTGGGATTTCTGAATCACAAGTGAAACCAGTATTAAAAAAACTCCTCAAATTGTATGATAAAAATTGGGAACTCATTGAGGAAGAGAACTATAGAGCTCTAGCAGATGCTATATTTGAGGATGATGAATATAAGGTGCCAGAACAGAAAAAGAAAGGCAAGAAAGTTAATGAAGAAGAGATGGAGGGTGAAGAAGCTCAGATGCATGTTGAACCCGCCCGTCCTTTGAAAAGGTTGCGCTTAAGAGGCCAAGAGAGTCAGCCTTTGCATCCTCCAACTATCAATTCCCATGGCTCAGATGCCTCTCCTTTGAAAAAGCTTAGATCAGAAGACAACACATCCGCAGAGGGCTGTTCTAGAAAGCAGCCTCAAAGTCAAAACAAAGCTGTGTCATCTGATGGAAATGTGAGGATTGAAGCACGCCCAGTTCCATCACGAGATGGTATTGTTGATAACGGAAAGCAACCTGCATCACCCCAAGTTGCTCTTAGAGGGAGAAGACTTCCATCTGAAAGAGCATCCCCATCAATACCATCTAAAGAACCAACAGTTGGACCAGGAAAGTTTCCATTGCCAAATGACCAAATGCCTCGTACTCATGCCTTGATCATACCCAAGGATGAGCCTCTTGATGAATTGCCTGATTTTAAGGTTCCCGTTACAGTGATTCCTCCTGAACCATCAAGTTTAAGGAACTCATCAATGAATAATGGCATAACTGGAAAGCAAGATGGCCATATCACTGTGGCATCATCACAACGCAGAGATGAAGATATTCTTCATTCTTCAAATGAAGAAGAAGCAATGTCTAATGTGGAGATTGCCACGTCAACTTCGGGAGAAGTAAAACTTTCTCTTAGCTGTAACTCAAGTCTTTTGGGGCCAGATTTTCATATGCCTAGTCGAGAGAAACTTATAAAAATGATTGTGGATAAATGTCTGCGATCATATAAAATCACCGACCCAAGTTTTTCTGTCCCTAAACTTTTGAGACAAATATGTGACTGCATGTTAGAATTTATAACTGATTCAAATGGTGACTCACAAGAAGGTTCTAGGACAATATCAAGTGTTGATTTATTGAAGGAATCAGAGGCACATAACACACTGAGTGCTGGGGGAAATAAAGATCTGGACATGCTTCCTCACTCATCAAATGGACCAATCAATGGTATTAAGTCTTCTCCTACCTTGGTTTCACCCCACAGTCCATTTTCTCTAGCCCACCTGACTGGTCGGGATGGTGCAGTATTGGTTTCCAAGATGAACAGGACAAATGATTTTTCACGAAGTGATGTCAGAAAAGTCAGAAAAGAGCCCGAGGATCCCATGTCTCCAAATTCCCATAGTTTAGTGGTTGTTCCACAGCATCAGCTTACAGCTGATGATGTAAGGTCTTTTCATGATGCTGATGACCTTACAAAAGGAGAAGAAAATGTTAAAATTTCCTGGGTGAATGAATCTACTCATGATTTTCCACCATATTTTAACTACATACCCCAAAATCTTGTGTTCCAAAATGCTTATGTTAACTTTTCTCTATCCCGTATTGGGGGTGAGGACTGTTGTTCACCCTGTATGGGCAATTGTGTCTTGCTTTCTACACCCTGCACTTGTGCAAATAAAACTGGGGGTGAATTTGCATACACTGCACAAGGCCTACTGAAGGAAGAGTTTTTGGAAGAGTGCATTGCCATCAGTCGCCACCCTCAACAACATTACTTCTATTGCAAAGATTGCCCACATGAAAGATCTAAGAATGATGTTTGTTTAGAACCATGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGTAAAGAATGTGGCAATCGGGTTACTCAGCGAGGAATAAGTTGCAACTTGCAGGTATTTTTCACTTCAGAGGGGAAAGGATGGGGCCTTCGTACATTAGAGGACCTGCCAAAAGGTGCATTTGTGTGTGAGTTTGTTGGAGAAATTTTAACCACCAAAGAGTTGCATGAGAGGAACATGAAATGCACTGAAAATGGGAAATATACATACCCAGTTCTACTAGACGCAGATTGGGATTCAGGATTTGTTAAGGATGAAGAAGCTCTATGCTTGGATGCAGCATCCTTTGGCAACACTGCTAGGTTTATCAATCACAGATGTTTTGATGCAAACTTGGTTGAGATCCCAGTTGAAGTTGAGGGCCCAGATCATTACTACTATCATTTGGCTTTTTTCACTTCCAGAAAAATAGTAGCACAGGAAGAGCTCACTTGGGATTATGGTATTGACTTTGATGACCATGATCATCCTGTCAAGCTATTCCAGTGCAGATGTGGTAGTAAATTCTGCAGGAATATGAAGCGAACGAATAGATCCGGAAGATCTGCATCAATTGCAAGATGA 2448 0.4142 MAPNPKVAAAYRAMANLGISESQVKPVLKKLLKLYDKNWELIEEENYRALADAIFEDDEYKVPEQKKKGKKVNEEEMEGEEAQMHVEPARPLKRLRLRGQESQPLHPPTINSHGSDASPLKKLRSEDNTSAEGCSRKQPQSQNKAVSSDGNVRIEARPVPSRDGIVDNGKQPASPQVALRGRRLPSERASPSIPSKEPTVGPGKFPLPNDQMPRTHALIIPKDEPLDELPDFKVPVTVIPPEPSSLRNSSMNNGITGKQDGHITVASSQRRDEDILHSSNEEEAMSNVEIATSTSGEVKLSLSCNSSLLGPDFHMPSREKLIKMIVDKCLRSYKITDPSFSVPKLLRQICDCMLEFITDSNGDSQEGSRTISSVDLLKESEAHNTLSAGGNKDLDMLPHSSNGPINGIKSSPTLVSPHSPFSLAHLTGRDGAVLVSKMNRTNDFSRSDVRKVRKEPEDPMSPNSHSLVVVPQHQLTADDVRSFHDADDLTKGEENVKISWVNESTHDFPPYFNYIPQNLVFQNAYVNFSLSRIGGEDCCSPCMGNCVLLSTPCTCANKTGGEFAYTAQGLLKEEFLEECIAISRHPQQHYFYCKDCPHERSKNDVCLEPCKGHLKRKFIKECWSKCGCGKECGNRVTQRGISCNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTTKELHERNMKCTENGKYTYPVLLDADWDSGFVKDEEALCLDAASFGNTARFINHRCFDANLVEIPVEVEGPDHYYYHLAFFTSRKIVAQEELTWDYGIDFDDHDHPVKLFQCRCGSKFCRNMKRTNRSGRSASIAR. 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05583 815 Gene3D - 1 59 IPR043017 -
Seca8g05583 815 Pfam SET domain 655 776 IPR001214 GO:0005515
Seca8g05583 815 MobiDBLite consensus disorder prediction 445 460 - -
Seca8g05583 815 MobiDBLite consensus disorder prediction 445 465 - -
Seca8g05583 815 SUPERFAMILY SET domain 495 799 IPR046341 -
Seca8g05583 815 CDD SET_SETDB-like 510 776 - -
Seca8g05583 815 MobiDBLite consensus disorder prediction 241 260 - -
Seca8g05583 815 Pfam Pre-SET motif 490 635 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca8g05583 815 ProSiteProfiles Pre-SET domain profile. 534 640 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca8g05583 815 MobiDBLite consensus disorder prediction 132 149 - -
Seca8g05583 815 MobiDBLite consensus disorder prediction 104 118 - -
Seca8g05583 815 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 -
Seca8g05583 815 MobiDBLite consensus disorder prediction 58 211 - -
Seca8g05583 815 Gene3D SET domain 471 785 IPR046341 -
Seca8g05583 815 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 815 IPR025776 -
Seca8g05583 815 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 810 - -
Seca8g05583 815 SMART preset_2 486 627 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca8g05583 815 ProSiteProfiles SET domain profile. 643 776 IPR001214 GO:0005515
Seca8g05583 815 MobiDBLite consensus disorder prediction 58 100 - -
Seca8g05583 815 MobiDBLite consensus disorder prediction 242 260 - -
Seca8g05583 815 FunFam SET-domain containing protein lysine methyltransferase family protein 489 801 - -
Seca8g05583 815 SMART set_7 643 782 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05583 Seca-Chr8 147309426 147316727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05583 488 799 Su(var)3-9 homologs AT1G73100 31.420 7.94e-29 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca8g05583 Pre-SET 6.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05583 - - gmx:100778335 1156.35