Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05582 ATGCTATATTTGAGGATGATGAATATAAGGGTGCCAGAACAGAAAAAGAAAAGCAAGAATGTTAATGAAGAGGAGATGGAGGGTGAAGAAGCTCAGATGCATGTTGAACCCGTCCGACCTTTGAAAAGGTTGCGCTTAAGAGGCCAAGAGAGTCAGCCTTTGCATCCTCCAACTATCAATTCCCATGGCTCAGATGCCTCTCCTTTAAAAAAGCTTAGATCAGAAAACAACACATCCGCGGAGGGCTGTTCTAGAAAGCAGCCTCAAAGTCAAAACAAAGCTGTGTCATCTGATGGAAATGCGAGGATTGAAGCACGCCCGGTTCCATCACGAGATGGTATTGTTGACAAAGGAAAGCAACCTGCATCACCCCAAGTTGCTCTTAGAGGGAGAAGACTTCTATCTGAAAGAACATCCCCATCAATACCATCAAAAGAACCAACAGTTGGACCAGGAAAGTTTCCATTGCCAAATGACCAAATGCCTCGTACTCATGCCTTGATCATACCCAAGGATGAGCCTATTGATGAATTGCCTGATTATGAGGTTCCCTTTGCAGTGATTCCTCCTGAACCATCAAGTTTAAGGAACTCATCAATGAATAATGGCATAAATGGAAAGCAAGATGGCCATGTCACTGTGCCATCATCGCAACGCAGAGATGAAGAAGAAGCAATGTCTAATGTAGAGATTGCCACATCAACTTTTGGAGAAGTAAAACTTTCTCTTAGCTGTAACTCAAGTCTTTTGGGGCCAGATTTTCGTATGCCTAGTCAAGAGAAACTTATAAAAATGATGGTGGATAAATGTCTGCCATCATATAAAATCACCGACCCAAATTTTTCTGTCCCTAAACTTTTGAGGCTAATATGTGACTGCATGTTGGAATTCAGAACTGATTCAAATGATGACTCACAAGGAGGTTCTAGGACAAGATCAAGTGTTGATTTATTGAAGGAATCAGAGGCACATGACACACTGAGTGCTGGAGGAAATAAAGTTCTGGACATGCTTCCTCACTCATCAAATGGACCAATCAATGTTATTAAGTCTTCTCCTACCTTGGTTTCACCCCACAATCCCTTTTCTCTAGCCCACCTGACTGGTCGGGATGATGCTGTATCGGTTTCCAAGATGAACAAGACAAATGATTTTTCACGATGTGATGTCAGAAAAGACCCCGAGGATCCTATGTCTCCAAATTCCCGTAGTTTAGTGGTTGTTCCACAGCATCAGCTTACAGCTGATGATGTAAGGTCTTTTCATGATGCTGATGACCTTACAAAAGGAGAAAATGTTAAAGTTTCCTGGGTGAATGAATCTACTCATGATTTTCCACCATATTTTAACTACATACCCCAAAATCTTGTGTTCCAAAATGCTTGTGTTAGCGTTTCTCTATCCCGTATTGGGGATGAGGACTGCTATGGTATTGGAGATTGTGTCTTGCAGTCTACACCCTGCACTTGTGCAAATAAAACGGGGGGTGAATTTGCATACACTGCACAAGGCCTACTGAAGGAAGAGTTTTTGGAAGAGTGCATTGCCATCAGTCGCCACCCTCAACAACATTACTTCTATTGCAAAGATTGCCCACTTGAAAGATCTAAGAATGATGTTTGTTTAGAACCATGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGTAAAGAATGTGGCAATCGGGTTACTCAGCGAGGAATAACTTGCAACTTGCAGGTATTTTTCACTTCAGAGGGAAAAGGATGGGGTCTTCGTACATTAGAGGACCTGCCCAAAGGTGCATTTGTGTGTGAGTTTGTTGGAGAAATTTTAACCACCAAAGAGTTGCATGAGAGGAACATGAAATGCACTGACAATGGGAAATATACATACCCAGTTCTACTAGACGCAAATTGGGATTCAGGATTTGTTAAGGATGAAGAAGCTCTATGCTTGGATGCAGCATCCTTTGGCAACACTGCTAGGTTTATCAATCACAGATGTTTTGATTCAAACTTGGTTGAGATTCCCGTTGAAGTTGAGGGCCCAGATCATTACTACTATCATTTGGCTTTTTTCACTTCCAGAAAAATAGCAGCACAGGAAGAGCTGACTTGGGATTATGGTATTGACTTTGATGACCATGATCATCCTGTCAAGCTATTCCAGTGCAGATGTGGTAGTAAATTCTGCAGGAATATGAAGCGAACAAATAGATCCAGTAGATCTGCATCATTTGCAAGGTGA 2253 0.4177 MLYLRMMNIRVPEQKKKSKNVNEEEMEGEEAQMHVEPVRPLKRLRLRGQESQPLHPPTINSHGSDASPLKKLRSENNTSAEGCSRKQPQSQNKAVSSDGNARIEARPVPSRDGIVDKGKQPASPQVALRGRRLLSERTSPSIPSKEPTVGPGKFPLPNDQMPRTHALIIPKDEPIDELPDYEVPFAVIPPEPSSLRNSSMNNGINGKQDGHVTVPSSQRRDEEEAMSNVEIATSTFGEVKLSLSCNSSLLGPDFRMPSQEKLIKMMVDKCLPSYKITDPNFSVPKLLRLICDCMLEFRTDSNDDSQGGSRTRSSVDLLKESEAHDTLSAGGNKVLDMLPHSSNGPINVIKSSPTLVSPHNPFSLAHLTGRDDAVSVSKMNKTNDFSRCDVRKDPEDPMSPNSRSLVVVPQHQLTADDVRSFHDADDLTKGENVKVSWVNESTHDFPPYFNYIPQNLVFQNACVSVSLSRIGDEDCYGIGDCVLQSTPCTCANKTGGEFAYTAQGLLKEEFLEECIAISRHPQQHYFYCKDCPLERSKNDVCLEPCKGHLKRKFIKECWSKCGCGKECGNRVTQRGITCNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTTKELHERNMKCTDNGKYTYPVLLDANWDSGFVKDEEALCLDAASFGNTARFINHRCFDSNLVEIPVEVEGPDHYYYHLAFFTSRKIAAQEELTWDYGIDFDDHDHPVKLFQCRCGSKFCRNMKRTNRSSRSASFAR. 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05582 750 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 20 745 - -
Seca8g05582 750 MobiDBLite consensus disorder prediction 10 49 - -
Seca8g05582 750 MobiDBLite consensus disorder prediction 1 160 - -
Seca8g05582 750 SUPERFAMILY SET domain 433 734 IPR046341 -
Seca8g05582 750 ProSiteProfiles SET domain profile. 578 711 IPR001214 GO:0005515
Seca8g05582 750 MobiDBLite consensus disorder prediction 53 98 - -
Seca8g05582 750 Pfam SET domain 590 711 IPR001214 GO:0005515
Seca8g05582 750 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 42 750 IPR025776 -
Seca8g05582 750 CDD SET_SETDB-like 447 711 - -
Seca8g05582 750 MobiDBLite consensus disorder prediction 201 222 - -
Seca8g05582 750 Gene3D SET domain 425 736 IPR046341 -
Seca8g05582 750 Pfam Pre-SET motif 430 570 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca8g05582 750 ProSiteProfiles Pre-SET domain profile. 480 575 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca8g05582 750 SMART preset_2 424 562 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca8g05582 750 SMART set_7 578 717 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05582 Seca-Chr8 147294444 147301813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05582 554 736 C2H2 Transcription Factor Family AT2G23740 40.741 5.49e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca8g05582 Pre-SET 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05582 - - gmx:100778335 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05582 8 147294444 147301813 Seca8g05582 8 147294444 147301813 ECH
Seca2g04427 2 129607060 129609696 Seca8g05582 8 147294444 147301813 PCT