Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05581 ATGGCTTTCGCTCTGTTTCCCCAAAATCCTCGCCGCCCTTCTCTACGCTTTCATCTGCGTTCTCGGCCTCGCCGCCGTCGCCCGCTGCGATTGTCTCTACCGCCTTCATCTCTCCTCTGTCCACCACCAACAAAGGCGTCAAGAAGAAAATCTTGCGCTCTCTCCCGACCGAAGCTCACCGTGACCGTGGAATCTACAGTGAATTTCTCCGATTGCGCGATCTGCCTGACTGAGTTCTTCACCGTTGACAAAATCCGAGTGCTACCTCGGTGCGACCATGGCTTTCATGTGTCCTGCATCGACGCGTGGCTCAAATCGCATTCTTCGTTCCTTTCATGCCGTCAAATTCTGGTGGTTTCTAGATGCGACAAGTGTGGCAGGATCCCTGCCATTGCCACTGCCAGCTCCAGCACCGCACCACCACCGGATTCTGAAGCCAGATTCAAGTGA 450 0.5489 MAFALFPQNPRRPSLRFHLRSRPRRRRPLRLSLPPSSLLCPPPTKASRRKSCALSRPKLTVTVESTVNFSDCAICLTEFFTVDKIRVLPRCDHGFHVSCIDAWLKSHSSFLSCRQILVVSRCDKCGRIPAIATASSSTAPPPDSEARFK. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05581 149 PANTHER RING-H2 FINGER PROTEIN ATL78 70 125 IPR044602 GO:0016567|GO:0016740
Seca8g05581 149 ProSiteProfiles Zinc finger RING-type profile. 72 113 IPR001841 -
Seca8g05581 149 SUPERFAMILY RING/U-box 66 116 - -
Seca8g05581 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 118 IPR013083 -
Seca8g05581 149 Pfam RING-like zinc finger 71 100 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05581 Seca-Chr8 147288356 147290715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05581 41 125 C3H Transcription Factor Family AT1G20823 57.303 3.10e-27 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05581 - - gmx:100794614 144.436