LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g05576	ATGGCACCCAATCCAAAAGTGGCAGAAGCCTATCGCGCAATGGCAAATCTTGGGATTTCTGAATCACAAGTGAAACCAGTATTAAAAAAACTCCTCAAATTGTATGATAAAAATTGGGAACTCATTGAGGAAGAGAACTATAGAGCTCTAGCAGATGCTATATTTGAGGATGATGAATATAAGGTGCCAGAACAGAAAAAGAAAAGCAAGAAAGTTAATGTTATAGCTGCTAAAATGTCTTCTGTCTTTTCAAACAATCAGGAAGAAGAGATGGAGGGTGAAGAAGCTCAGATGCATGTTGAACCTGCCCGACCTTTGAAAAGGTTGCGCTTAAGAGGCCAAGAGAGTCAGCCTTTGCATCCTCCAACTATCAATTCCCATGGCTCAGATGTCTCTACTTTAAAAAAGCTTAGATCAGAAGACAACACATCCGCGGAGGGCTGTTCTAGAAAGCAGCCTCAAAGTCAAAACAAAGCTGTGTCATCTGATGGAAATGTGAGGATTGAAGCACGCCCAGATCCATCACGAGATGGTATTGTTGACAAAGGAAAGCAACCTGCATCACCCCAAGTTGCTCTTAGAGGGAGAAGACTTCTATCTGAAAGAGCATCACCATCAATACCATCTAAAGAACCAACAGTTGGACCAGGAAAGTTTCCATTGCCAAATGACCAAATGCCTCGTACTCATGCCTTGATCATACCCAAGGATGAGCCTATTGATGAATTGCCTGATTATGAAGTTCCCATTGCAGTGATTCCTCCTGAACCATCAAGTTTAAGGAACTCATCAATGAATAATGACATAACTGGAAAGCAAGAAGGCCATGTCACTGTGGCATCATCGCAACGCAGAGATGAAGATATTCTTCATTCGTCAAATGAAGAAGAAGCAATGTCTAATGTAGTGATTGCCACGTCAACTTCGGGAGAAGTAAAACTTTCTCTTAGCTGTAACTCAAGTCTTTTGGGGCCAGATTTTCATTTGCCTTGTCGAGAGAAACTTATAAAAATGATGGTGGATAAATGTCTGCGATCATATAAAATCACCGACCCAAGTTTTTCTGTCCCTAAGCTTTTGAGGCAAATATGTGACTGCATGTTAGAATTCAGAACTGATTCAAATGATGACTCACACGAAGGTTCTAGGACAAAATCAAGTGTTGATTTATTGCAGGAATCAGAGGCACATGACACACTGAGTGCTGGGGGAAATAAAGATCTGCACATGCTTCCTCACTCATCAAATGGACCAATCAATGTTATTAAGTCTTCTCCTACCTTGGTTTCACCCCGCAGTCCCTTTTCACTAGCCCACCTGACTGGTCAGGATGATGCTGTATTGGTTTCCAAGATGAACAGGACAAATGATTTTTCACGAAGTGATGTCAGAAAAGAGCCCAAGGATCCCATGTCTCCAAATTCCCATAGTTTAGTGGTTGTTCCACAGCATCAGCTTACAGCTGATGATATAAGGTCTTTTCATGATGCTGATGACCTTACAAAAGGAGAAGAAAATGTTAAAATTTCCTGGGTGAATGAATCTACTCATGATTTTCCACCATATTTTAATTACATACCCCAAAATCTTGTGTTCCAAAATGCTTATGTTAACGTTTCTCTATCCCGTATTGGGGGTGAGGACTGTTGTTCACCCTGTATGGGCAATTGTGTCTTGCTGTCCACACCCTGCACTTGTGCAAATAAAACGGGGGGTGAATTTGCATACACTGCACAAGGCCTACTGAAGGAAGAGTTTTTGGAAGAGTGCATTGCCATCAGTCGCCACCCAAAACAACATTACTTCTATTGCAAAGATTGCCCACTTGAAAGATCTAAGAATGATGTTTGTTTGGAACCATGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGCTGGAGCAAATGTGGCTGTGGTAAAGAATGTGGCAATCGGGTTACTCAGCGAGGAATAACTTGCAACTTGCAGGTATTTTTCACTTCAGAAGGAAAAGGATGGGGTCTTCGTACATTAGAGGACCTGCCAAAAGGTGCATTTGTGTGTGAGTTTGTTGGAGAAATTTTAACCACCAAAGAGTTGCATGAGAGGAACCTGAAATGCACTGAAAATGGGAAATATACATACCCAGTTCTACTAGACGCAGATTGGGATTCAGGATTTGTTAAGGATGAAGAAGCTCTATGCTTGGATGCAGCATCCTTTGGCAACACTGCTAGGTTTATCAATCACAGATGTTTTGATGCAAACTTGGTTGAAATCCCAGTTGAAGTTGAGGGCCCAGATCACTACTACTATCATTTGGCTTTTTTCACTTCCAGAAAAATAGCAGCACAGGAAGAGCTCACTTGGGATTATGGTATTGACTTTGATGACCATGATCATCCTGTCAAGCTATTCCAGTGCAGATGTGGTAGTAAATTCTGCAGGAATATGAAGCGAACGAATAGATCCGGTAGATCTGCATCAATTGCAAGATGA	2481	0.4135	MAPNPKVAEAYRAMANLGISESQVKPVLKKLLKLYDKNWELIEEENYRALADAIFEDDEYKVPEQKKKSKKVNVIAAKMSSVFSNNQEEEMEGEEAQMHVEPARPLKRLRLRGQESQPLHPPTINSHGSDVSTLKKLRSEDNTSAEGCSRKQPQSQNKAVSSDGNVRIEARPDPSRDGIVDKGKQPASPQVALRGRRLLSERASPSIPSKEPTVGPGKFPLPNDQMPRTHALIIPKDEPIDELPDYEVPIAVIPPEPSSLRNSSMNNDITGKQEGHVTVASSQRRDEDILHSSNEEEAMSNVVIATSTSGEVKLSLSCNSSLLGPDFHLPCREKLIKMMVDKCLRSYKITDPSFSVPKLLRQICDCMLEFRTDSNDDSHEGSRTKSSVDLLQESEAHDTLSAGGNKDLHMLPHSSNGPINVIKSSPTLVSPRSPFSLAHLTGQDDAVLVSKMNRTNDFSRSDVRKEPKDPMSPNSHSLVVVPQHQLTADDIRSFHDADDLTKGEENVKISWVNESTHDFPPYFNYIPQNLVFQNAYVNVSLSRIGGEDCCSPCMGNCVLLSTPCTCANKTGGEFAYTAQGLLKEEFLEECIAISRHPKQHYFYCKDCPLERSKNDVCLEPCKGHLKRKFIKECWSKCGCGKECGNRVTQRGITCNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTTKELHERNLKCTENGKYTYPVLLDADWDSGFVKDEEALCLDAASFGNTARFINHRCFDANLVEIPVEVEGPDHYYYHLAFFTSRKIAAQEELTWDYGIDFDDHDHPVKLFQCRCGSKFCRNMKRTNRSGRSASIAR.	827

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g05576	826	CDD	SET_SETDB-like	521	787	-	-
	Seca8g05576	826	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	826	IPR025776	-
	Seca8g05576	826	SUPERFAMILY	SET domain	506	810	IPR046341	-
	Seca8g05576	826	FunFam	SET-domain containing protein lysine methyltransferase family protein	500	812	-	-
	Seca8g05576	826	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	821	-	-
	Seca8g05576	826	MobiDBLite	consensus disorder prediction	146	163	-	-
	Seca8g05576	826	ProSiteProfiles	SET domain profile.	654	787	IPR001214	GO:0005515
	Seca8g05576	826	Gene3D	SET domain	483	797	IPR046341	-
	Seca8g05576	826	SMART	preset_2	497	638	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Seca8g05576	826	SMART	set_7	654	793	IPR001214	GO:0005515
	Seca8g05576	826	MobiDBLite	consensus disorder prediction	137	225	-	-
	Seca8g05576	826	ProSiteProfiles	Pre-SET domain profile.	545	651	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Seca8g05576	826	Gene3D	-	1	59	IPR043017	-
	Seca8g05576	826	Pfam	Pre-SET motif	501	646	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Seca8g05576	826	Pfam	SET domain	666	787	IPR001214	GO:0005515
	Seca8g05576	826	Pfam	Ubiquitin-binding WIYLD domain	6	59	IPR018848	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g05576	Seca-Chr8	147256965	147263840	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g05576	630	812	C2H2 Transcription Factor Family	AT2G23740	40.212	4.71e-29	123

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Seca8g05576		Pre-SET	7e-18	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g05576	-		-	gmx:100778335	1195.26