Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05559 ATGGATGTCACACGATTTTTCGATAAAATCTTAGCTTCAACTTCTTCTTCTTCAGGATCGTCGAATATCTTTTTGAACACGATCCTAGGATTGCCTGTGTTGGAACTTGCGGCAATATGTGTGAACCTGACCCTTGTTTTGTTGTTTCTCTTTGTTGCCTCCGTGAGACGGATTCTTGTGTATGAGGGTCGATTTGTAAAGGACAGCACCGCCGGCAATGCCAGCCCAATTTGCAGTGTTATTAATAGAGAAACACGTGATGTTCGAATCGGTGTAGTGTTCAAGTTGTCAGTGTTGTCTTGTTTTTATGTTCTGTTTGTGCAAGTTTTGGTGTTGGGGTTTGATGGGGGTGGGGCTAATGGGAAGCCTGTGGACTGGTCTCTTCTTTTTGTGCCAGCTTCACAGGGTTTAGCTTGGTTTGTGTTGAGCTTTTCTGCTTTGTATTGCAAATTCAAGGAGTCAGAGAAGTTTCCATTTTTGTTGAGAGTTTGGTGGTTTTTGTCATTTGTTATTTGCTTGTGTAATTTATATGTTGATGGGAGAGGATTTTGGGTCGAAGGTTCCAAGTACCTCTCTTCTCATGTTGTTGCAAATTTTGCTGTCACACCAGCTCTTGCCTTTTTGTGTGTAGTTGCAATTAGGGGTGTTACTGGTATACAAGTTTGTAGAAACCCTGATCTTCAAGAGCCATTACTTGTTGAAGAAGAACCAGGGTGTCTTAAGATTACTCCTTATAGAGATGCTGGACTTTTTAGCTTGGCTACTCTTTCTTGGCTGAATCCACTTCTTTCCATTGGTGCAAAGAGACCGCTTGAGCTTAAGGACATTCCCCTTGTTGCACCAAAAGATCGAGCCAAGACAAGTTACAAGGTTTTGAATTCTAATTGGGAGAGATTGAAGGCTGAGAATCCCTCTAAGCAGCCTTCATTAGCTTGGGCAATTCTCAAGTCATTCTGGAGAGAAGCAGCTCTGAATGCCATATTTGCTGGTGTGAATACTTTGGTGTCATATGTAGGTCCATACATGATAAGTGACTTTGTTGATTACTTGGGTGGAAAAGAAACTTTTCCTCATGAGGGATATATCCTTGCGGGTATATTCTTTGTGGCAAAGCTTGTGGAGACCCTAACAACCAGGCAATGGTATCTAGGAGTAGACATTTTGGGTATGCATGTCAGGTCAGCTCTAACTGCAATGGTATATAGAAAGGGACTCAGATTATCAAGCTTGGCCAAGCAAAGTCATACTAGTGGAGAGATTGTCAACTACATGGCTGTTGATGTTCAGAGAGTAGGGGACTACTCTTGGTACCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTGTAATTTTGTATAAGAATGTTGGAATTGCTTTTGTTGCTACATTGATTGCTACAATCATTTCCATTGTTGCCACTGTTCCTGTGGCTAAGATACAAGAAGATTATCAAGACAAATTAATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCTGAGTGTCTCAGGAATATGAGGATTCTCAAGCTGCAAGCTTGGGAGGATAGATACAGAATAAAATTGGAGGAAATGCGTGGAGTAGAATTCAAGTGGCTCAAGAAAGCACTTTATTCTCAAGCTTTCATAACTTTCATATTCTGGAGCTCCCCTATATTTGTTTCAGCAGTCACTTTTGCTACTTCCATATTGTTAGGAGGTCAGCTGACTGCAGGTGGTGTTCTATCTGCTCTAGCTACTTTCAGGATTCTCCAAGAACCTCTGAGAAATTTTCCTGACTTGGTATCTACCATGGCTCAGACAAAGGTTTCTCTTGATCGCATATCTGGTTTCCTGCAGGATGAAGAGTTGCAGGAAGATGCAACTATTGTCTTGCCACATGGCATGTCTAACAATGCTGTAGAAATTGAGGATGGTGTCTTCTCTTGGGACCCTTCTTTGTGTAGGCCTACTCTATCAGGAATACATATGAAAGTGGAAAGGGGGATGACTGTGGCTGTTTGTGGTGTGGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCCAAGCTTTCTGGTGAAGTAAGGGTGTGTGGTTCTGCTGCATATGTCTCCCAATCAGCATGGATACAGTCAGGAAATATAGAAGAAAACATCCTGTTTGGAAACCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACATGGAGACCAAACAATTATTGGTGATAGAGGTATAAACTTGAGTGGTGGCCAGAAGCAGCGGATTCAGCTTGCAAGAGCACTCTACCAAGATGCAGATATTTATCTTCTTGATGATCCCTTTAGTGCAGTTGATGCCCACACTGGATCAGAATTATTCAGAGAGTATGTATTGACAGCACTAGCAGATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTACTGATATGATACTGGTTCTTAAAGAAGGTCACATCATACAAGCAGGAAAGTATGATGATCTTTTACAGGCAGGAACAGATTTTAGAACTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGACATTCCTACTCACTCAGAAGATTCAGATGAAAATGTGACCTTGGATGCATCTGTTTTGACCAGTAAGACATCCATTTCTTCTGCAAATGATATTGACAGTTTGGCAAAGGAAGTTCAAGAAGGATCATCTGATCAGAAAGCAATTAAGGAGAAGAAGAAGAAAGCAAAGCGCTCAAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGAAGGTGTACTTGTCCTACATGGCTGCAGCATATAAAGGCTTATTGATTCCCCTTATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATTGCCAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACAGAGGGAGACCAACCCAAAGTAACTCCCACGGTTCTACTTCTTGTTTACATGGCCCTTGCTTTTGGCAGTTCATGGTTCATATTTGTAAGGGCTGTTCTCGTGGCTACATTTGGTCTAGCAGCTGCACAGAAACTATTTTACAACATGCTGAGAAGTATTTTCCGTGCACCAATGTCTTTCTTTGATTCTACACCAGCTGGAAGGATCTTGAATCGGGTTTCAATTGATCAAAGTGTGGTGGATCTTGACATTCCTTTTAGATTAGGAGGGTTTGCTTCATCAACAATACAGCTTATTGGCATTGTTGGTGTAATGACAGAAGTTACATGGCAAGTTTTGCTCCTAGTAGTCCCAATGGCAATTGTTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTACGCATTGTAAGCATTCAGAAATCTCCAGTTATACAACTTTTTAGCGAATCAATTGCTGGAGCAGCCACCATAAGAGGCTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTATATCTTCTGGATTGTTTTGCACGACCATTCTTCTGCAGTCTCGCAGCTATTGAGTGGCTCTGTCTGCGCATGGAATTGCTTTCAACCTTTGTATTTGCTTTCTGCATGGTATTACTTGTGAGCTTTCCCCGTGGAAGTATTGATCCTAGCATGGCTGGACTTGCTGTGACGTATGGCCTGAATTTAAATGGACGTCTATCACGGTGGATACTTAGCTTTTGCAAACTTGAAAATAAAATTATCTCTATTGAAAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCACCTGCAATTATTGAAGATTCTCACCCTCCATCCTCATGGCCTGAGAATGGGACAATCCAACTAATTGATCTGAAGGTGTCTAAATCAAGCTTTAACAATGTGCCATACATCAAATTCTTTATTATGATTTTTCTACTGCAATTGGCTCTTTCTCATGATGATGTGCCTCATATTCCCCCTACTCTGTCTCTTTTAAAGGTCCGTTACAAGGAAAATCTCCCTTTGGTACTTCATGGAGTATCCTGCACATTTCCTGGTGGGAAGAAAATTGGAATAGTTGGACGAACTGGCAGTGGCAAAACTACTTTGATTCAAGCATTATTTCGATTGGTTGAACCGGCATCTGGGAGTATCCTTATAGACAACATCAACATTTCAGGCATTGGCCTTCATGACCTTCGAAGCCATCTCAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAGGCAATCTTGATCCCCTTGAAGAGCACTCTGATAAAGAGATTTGGGAGGCATTAGATAAGTCTCAGCTTGGAGAGATCATCCGTGAGAAAGGGCAAAAGCTTGATACACCAGGTAGCTATCTTAAGATTTATTTCAAATGTGCAGTGCTAGAAAATGGAGATAATTGGAGTGTAGGACAGCGGCAACTGGTTTCTCTTGGCCGAGCTCTTCTTAAACAATCAAAGATACTTATACTTGATGAAGCAACGGCATCTGTTGATACTGCTACTGATAATCTTATCCAGAAGATTATTCGAAAAGAGTTTAGAGACTGCACTGTTTGCACTATTGCACATCGTATTCCTACTGTCATTGACAGTGATCTAGTTCTCGTACTCAGTGATGGTCGAGTTGCGGAGTTTGACACTCCATCACGGCTATTAGAGGATAAGTCATCCATGTTTCTGAAGTTGGTCACTGAATATTCATCGCGATCAAGTGGCATACCAGATTTATAA 4737 0.4138 MDVTRFFDKILASTSSSSGSSNIFLNTILGLPVLELAAICVNLTLVLLFLFVASVRRILVYEGRFVKDSTAGNASPICSVINRETRDVRIGVVFKLSVLSCFYVLFVQVLVLGFDGGGANGKPVDWSLLFVPASQGLAWFVLSFSALYCKFKESEKFPFLLRVWWFLSFVICLCNLYVDGRGFWVEGSKYLSSHVVANFAVTPALAFLCVVAIRGVTGIQVCRNPDLQEPLLVEEEPGCLKITPYRDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLVAPKDRAKTSYKVLNSNWERLKAENPSKQPSLAWAILKSFWREAALNAIFAGVNTLVSYVGPYMISDFVDYLGGKETFPHEGYILAGIFFVAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIVLALVILYKNVGIAFVATLIATIISIVATVPVAKIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIKLEEMRGVEFKWLKKALYSQAFITFIFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISGFLQDEELQEDATIVLPHGMSNNAVEIEDGVFSWDPSLCRPTLSGIHMKVERGMTVAVCGVVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGNIEENILFGNPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTGSELFREYVLTALADKTVIFVTHQVEFLPATDMILVLKEGHIIQAGKYDDLLQAGTDFRTLVSAHHEAIEAMDIPTHSEDSDENVTLDASVLTSKTSISSANDIDSLAKEVQEGSSDQKAIKEKKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDQPKVTPTVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFYNMLRSIFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVGVMTEVTWQVLLLVVPMAIVCLWMQKYYMASSRELVRIVSIQKSPVIQLFSESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPRGSIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIIEDSHPPSSWPENGTIQLIDLKVSKSSFNNVPYIKFFIMIFLLQLALSHDDVPHIPPTLSLLKVRYKENLPLVLHGVSCTFPGGKKIGIVGRTGSGKTTLIQALFRLVEPASGSILIDNINISGIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEIIREKGQKLDTPGSYLKIYFKCAVLENGDNWSVGQRQLVSLGRALLKQSKILILDEATASVDTATDNLIQKIIRKEFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPSRLLEDKSSMFLKLVTEYSSRSSGIPDL. 1579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05559 1578 FunFam ABC transporter C family member 5 622 869 - -
Seca8g05559 1578 MobiDBLite consensus disorder prediction 911 931 - -
Seca8g05559 1578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 859 IPR027417 -
Seca8g05559 1578 Gene3D ABC transporter type 1, transmembrane domain 293 620 IPR036640 GO:0005524|GO:0016020
Seca8g05559 1578 Gene3D ABC transporter type 1, transmembrane domain 922 1261 IPR036640 GO:0005524|GO:0016020
Seca8g05559 1578 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1323 1566 IPR003439 GO:0005524
Seca8g05559 1578 CDD ABC_6TM_ABCC_D1 324 611 IPR044746 GO:0140359
Seca8g05559 1578 CDD ABCC_MRP_domain1 637 836 - -
Seca8g05559 1578 Gene3D - 631 865 IPR027417 -
Seca8g05559 1578 Pfam ABC transporter 655 789 IPR003439 GO:0005524
Seca8g05559 1578 CDD ABC_6TM_ABCC_D2 961 1255 IPR044726 GO:0140359
Seca8g05559 1578 Gene3D - 1322 1568 IPR027417 -
Seca8g05559 1578 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 246 1569 - -
Seca8g05559 1578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1327 1562 IPR027417 -
Seca8g05559 1578 FunFam Multidrug resistance-associated protein member 4 1322 1568 - -
Seca8g05559 1578 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 323 603 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g05559 1578 FunFam ABC transporter C family member 10 306 619 - -
Seca8g05559 1578 ProSitePatterns ABC transporters family signature. 762 776 IPR017871 GO:0005524|GO:0016887
Seca8g05559 1578 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 963 1233 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g05559 1578 Pfam ABC transporter transmembrane region 963 1205 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g05559 1578 Pfam ABC transporter transmembrane region 326 591 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g05559 1578 SMART AAA_5 664 845 IPR003593 GO:0016887
Seca8g05559 1578 SMART AAA_5 1347 1543 IPR003593 GO:0016887
Seca8g05559 1578 Pfam ABC transporter 1338 1497 IPR003439 GO:0005524
Seca8g05559 1578 SUPERFAMILY ABC transporter transmembrane region 960 1260 IPR036640 GO:0005524|GO:0016020
Seca8g05559 1578 SUPERFAMILY ABC transporter transmembrane region 312 619 IPR036640 GO:0005524|GO:0016020
Seca8g05559 1578 FunFam ABC transporter C family member 5 924 1261 - -
Seca8g05559 1578 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 637 860 IPR003439 GO:0005524
Seca8g05559 1578 CDD ABCC_MRP_domain2 1326 1550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05559 Seca-Chr8 147027578 147036439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05559 637 853 Calmodulin-binding Proteins AT2G36910 31.780 1.20e-19 94.4